Gene detail

Detailed information of FUN_040952-T1 in Acropora pulchra

Genomic Location: ptg000033l:391335...423639
NR annotation: XP_015760509.1, PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform X1 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_040952-T1

ATGGTGGACACATTCGATCTTTTTAGACGTCTTAGTGTGGGAACCAAATTTAGCAAAAGAAATCGTCTAAAAGAATCACATAGCTCAGTGTTGTGTAGTGAAGTCAGTGTTGCATCAGATGATCCTGCTCATGCCCTTGATTTTTTTGGAGCTTCAAGAAACTTCAGGATTGAAAATGGTGACAATTCTAGACAAAAAGGAACAACCCAGCTAGAAAAGAGAAAGAAACACCATTGGCAAACAGACAAAGAAAAAGGAAATTGGGAGGAGAAAGGTGTTTGTGAGAATCATAGAAAGAAACGAAAGAAAGGATGTGGAGAGGCAGATGAAAGTTCAACAATACCAGACTCAACAGTTAAAGTTTTTACTTCCCCATTAAATATTGATGATGAGTCTGCTAAAGACAATTCAGAAAGGCTGTTGGAGGGTCACAAGGAACAGATAAATCAAATGAGGAGGAAGCATCACATAAATGTTAAGGGCTCAGACATCCCTGACCCAGTTGAATCTTTTTCTTCATTACAGGAAAGGTACAAGATTCCCCTATTCATGGTAAAAAATGTAACACAGCGAGGCTACCAAAGTCCTACACCTATTCAGATGCAAGCTATTCCAGTTATGTTGCATAAAAGGGAAGTCTTATGCTGCGCCCCCACTGGCTCAGGGAAAACTGTGGCTTTCATTCTGCCAATTCTCTATCATCTGAAGTCATCTGGTGCACAAGGTTTTAGAGCTGTTGTTGTATCACCAACAAGGGAACTTGCTAGACAGATTTATCAAGAATTCTGTCACTTGTCTGATGGGAGAAAATTCAGAATTCATTTATTAACTAAAGCCATGGCTTCATCCAACAGTTTCGGACAGAATTCCAGCAAGAAATTTGACATCCTAGTTACCACACCTAACCGATTGGTCTACATGTTGAAACAGGGTCCCTCAAAGATTGCACTTCACAATGTAGAGTGGCTCATTCTTGATGAAGCTGATAAACTTTTTGAAGAAGGAAAAGATGGATTTAGAGAACAAGTGGCTGCAATATATCAGGCATGTGACAAGCCTGATGTTAAGAGAGCCTTGTTCAGTGCGACACTATCAAATGGCATTGATGAATGGGCAAGCATTCACTTGGACAATGTTGTTAAAGTAACAGTCGGTATCAGAAACACTGCTACACAAACAGTGGAACAAGAATTGCTTTTTGTGGGTCAAGAGTCTGGAAAGCTGCTTGCTGTTAGAGAGATTGTTAAGAAGGGATTCCAGCCGCCTATGTTAATATTTGTCCAGTCTAAAGAAAGAGCTAAAGAACTGTTTCACGAGCTTATTTATGATGGAATTAACGTGGAAGTGATTCACTCGGAAAGAACTCAAACTCAGAGGGATAACATAGTGAAGTGCTTCAGAGCTGGAAAGATCTGGGTTCTCATTTCAACTGAGCTAATGGGGCGTGGAATTGATTTCAAGGGAGTGAATTTGGTCATAAATTATGACTTTCCCACATCTGCTGTTGCGTATATTCACAGAATAGGTAGAACAGGTCGAGCGGGAAGACCAGGAAAAGCCATAACATTTTATACCGAGGACGATGGTAGCAATTTACGAAGTATAGCGAATGTGATGAGGAGTTCAGGATGTGAGATTCCAGACTGGATGTTGAAGTTAAAAAAGCCATCAAGGAAAATCCGGAAGAAGTTATCCAAGAATCCTCCGTCACGATCTCCGATTAAAACAGTGTCCAAATACGATATAGAAAAGGCTAAGAGAAAGAGAGATATAAAAGAAGCTTCTAAGATGAAAAAAGTGAAATTAACCTCCAAATCCGCTTAGGAGAAAACCATACAGCTTATTCCAAGAGTCAACTGAACACAGATGTCAAGCGGACGATTTCTTTTTTTATTCTGGTGTTTGTTTCGCATGTTTGACATAAAATGGATTCGAACCTGTTAGGAACTTGTACTTTGTAAGGATCCATAAGTAACCCAGTCTCAATAAAAACAAATACAGTTCGGAAATGAGAAGCATAGAAAAGACTGGTTATTTTAGGGGCTGTGAGCGATGCGTCATTAAGGTGTAGAGACTAGGGAGCTTAAGCACGAGACGTTGTTGAGCCACGGACGGCAATCGCAAGTGATTTCGAAACCAGGAGTGACGTCACATATCATAGTCGAGTGACGGACGCCAAAACTGAGTTTTTACCGTCAGGGAAGAAACACTTCTAAAACGCTAGAAGATAAGTAGACGATATGAGTATTAAATATATTTTTAAAAATATTCTTGCAGTTTTCTTGAGTTTACTTTACAGTCAACTATCCATTTCCATTGATTTAAACAAGTAATTTTCTTTTGTCAGTTGTACAGATTATAAAAAAATGTGCGGCAGACAGCGAGAGTTCTGCAAATAATCATTAAGATTAAGATGCGACATTAGCTACTCTCTTTAATTTGGAGATTTTCCTCTCATGTACATCTTTCTGGTTTTCGTCTTTTTTGCCTCTGAGAAATGCAGAATCTTTCAGGGAGGTGCAGAGCCTCGGCTTATTCCAGCAGATCATATTTTTGTAATTGAAGTTTGCTTTGTATTCGGAATTATCCATGTCGACCAACTCAAAGCAATCGTAATCCATTTCTGGATTTCTAGCCGTGTTTTCTTCTGACGGTAAGTAATAGTAATTGGAGCGAGTAGAGTACAATTGTTACAATTCAGGGAGTAATCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99PT0	Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Q8K301	Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
A5D7C1	Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan
IPR044764 all species →	Domain	DDX52/Rok1, DEAD-box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14779	DDX52, ROK1; ATP-dependent RNA helicase DDX52/ROK1	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.