Gene detail

Detailed information of FUN_041213-T1 in Acropora pulchra

Genomic Location: ptg000035l:263294...271927
NR annotation: XP_029183167.2, fibropellin-1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_041213-T1

ATGGCTGTTCTGTTGCTCTGGGTGCTTGTCGGCGCTTGCTTTTATATCGGAGCGACAGGAAATCCATGTTCTCCGAATCTTTGCTGGAACGGCGGACTGTGTTCAACAAACGGCTCTTCGTTTACTTGCAGTTGTCCGCAAGGATTCCGTGGCCAAAAATGCGAGTATCGAAGTACAGATTGTCAAGTGAACCCTTGTGTTCATGGCATATGTAGCCTGGATAAATCTGGAAAGCCAGAATGCTACTGTACTCCTGGATTTACCGGTCAACGTTGTGAAATCGATCATAATGAGTGTGCTTCGGAGCCCTGCAAAAATGGCGCCCTGTGTATCGATCAAGTGAATGGTTACAAATGTATCTGTAATGGCGATACTTATGGCCGACATTGCGAAATTCATCAGAGTGAAGTGCAGCAGTGTATTGAGCGATGTGACCAAGAAATTTGCTGGAGAAATTACTCAACGACCGTAGGTGTAACTTGGGGTTATAACCCAGGTATTTGTAGCACTAGTCATTCGTGTTTTGGTGGAGAGAACGATACCGAATCCAACATTTACGACACGTTTGTGGAAGTCCAGTTGAAACCGTTACAGATTCAGGCTGGAGATACACTAAATTTTACCGCGGATACAGAAATTGTTGCTTATGCGAATGGATTTGTGCCGCATCACGTAGTAGCTACAGACGGAGCTAAAGCATTTGTAGCATGTAATGAAAGCAATGGAATTCCCATCGTGAACAAACCAACAAATAGCGTTGTGGTAGGTTTAGACATTCTTACACCAGGCGTCCATTATTTTATTGCCAACATCGATTCTACGTTTCGCTGCCATTTTGGTTTGCGTTTGAATGTTAGTGTTAAAGAGAACAAGTGTGTGGCACCAGCATCAAACCTTACTTGCTCGGATCGAGGACAATGCACCACTAACTTCACAACGCCAGACTTCAGTTGCAAATGTTGTGGCGGCTTCAGGGGTGATTATTGCGAAAAAGTGGACTATTGTTTCTCAAAGCCTTGCAAGAATAATGCAGAATGTCAAAACCTGGAAACTTCTGTTGATGGAAACACACATGTATGCATCTGTCAGCCTGGCTATGAGGGAAGAGACTGCTCACATGTCACAGATATGTGTCTGTCTGCTCCTTGTGCCCATGGCGGCCAGTGTGTGCCCAGGGTGAATAACTTTACATGTGACTGTCCAAAGGGGTTCATTGGTCGATATTGTGAAATAGATGTCAATGAATGCGATTCTAATCCTTGTATGAATGGTGCTTGTGTTGATAGACCAGGAGAATTTCTCTGTAATTGTTTGACAGGCTTCACAGGCCCTCGTTGTGAAGTTGACATTGATGAATGTTCCTCTTCACCTTGTCTTCACGGGACTTGCATAGATCAAGTAAATGGTTTCAAATGTCACTGTTTAGCGGGATATTCTGGTGTGCTGTGTGATTTCAATATTCAAGAATGTCTGCCGTCCAACCCTTGTCACAATGGAGGAAGGTGTATTGACGAAGTGAACGGTTATAGATGTGACTGTGGGCTGGGCTTTAAGGGAAGTCACTGCGAAATTGATGTTGACCTCTGTAATGACCCAAGCTTGTGCAGCAATTCTGTCTCGTGCACTGAAACTAGCGACAGGCAAAGTGTGCAGTGTACTTGTAAAGCTGGTTTTACAGGACACAACTGTGCTGTAAACATCAACGACTGCTTGTCAAGTCCATGTAAGAATGGGGGCACTTGTCGGGACAAAGTCAGTGGCTTCCAGTGTATATGTGGGGATGGCTTCACTGGAATCACATGTGATGACTTTGCAGAAAAATCCCCTGGTGAAGAATTCCAGCGGCAGTTGAGCGTAAAGCTGTTGACTGAAGATTGCAGACTTTTACAGATGCAGGGCCAGGCAGCAGTGACACACATTCAACAGGCAATGGCTGCAAGCGTTGCAGAGGCATGCAACTGCAGTTTCACCTCTTCAGACATTGCGGAAGGATCTGTGTTGCTGCAGTGTCGAAACAGCATGAGTGCAGAAGTCAGTATGCAAATCAAACCAGCCAATCATCAGCAGCTGATTTGTCAATTTCACAGTCTGCTCACACAGCGCCAGAATGTTATTGACTTAGGGCATAGTACTTTTGCCGTGCAGGTTCTTAGTGACGTCTCATATTGTGATCACTTGGATGACGAGGAAAGTCCTGTGGACGCAAGAAACCAAGAAAGACATAAAGTCAGTAGTTCAAGACATCTTGCTATAACTATATCATTGGTGTGTGCAGCCGTTGGTCTTATTGTAGCAGCCATACTTGTCTGTCTCAAGTTTCGGAGGACACGCCCTCCAGTCAAGAAACATCCTTCCAAGGGAGAGAATCAACTGATAGAGGACTTAAGTGCTGACTTGCTCTCTGCTGTGGCTCCTACACCCAAGTCAATGTATCGCACAAGTGGTGGCTATCACAACATGGCTTTCTCAGGGAGATTCAACCCTGAAAATCCTGTCAAATCACGCAGAGTGTGA

Transcript

FUN_041213-T1

GGTTAATTTCAACAATCTAATCGCTGTTTGATTGGGTAAATTCCCTTGGCTCCCATGACGATTCTTTGTTTAACCACGCTGTTCCAACTTAAATTGTTTTAAAAGTTTATTTCCTTCTGATCTTGAAAAACGTAAAATGGCTGTTCTGTTGCTCTGGGTGCTTGTCGGCGCTTGCTTTTATATCGGAGCGACAGGAAATCCATGTTCTCCGAATCTTTGCTGGAACGGCGGACTGTGTTCAACAAACGGCTCTTCGTTTACTTGCAGTTGTCCGCAAGGATTCCGTGGCCAAAAATGCGAGTATCGAAGTACAGATTGTCAAGTGAACCCTTGTGTTCATGGCATATGTAGCCTGGATAAATCTGGAAAGCCAGAATGCTACTGTACTCCTGGATTTACCGGTCAACGTTGTGAAATCGATCATAATGAGTGTGCTTCGGAGCCCTGCAAAAATGGCGCCCTGTGTATCGATCAAGTGAATGGTTACAAATGTATCTGTAATGGCGATACTTATGGCCGACATTGCGAAATTCATCAGAGTGAAGTGCAGCAGTGTATTGAGCGATGTGACCAAGAAATTTGCTGGAGAAATTACTCAACGACCGTAGGTGTAACTTGGGGTTATAACCCAGGTATTTGTAGCACTAGTCATTCGTGTTTTGGTGGAGAGAACGATACCGAATCCAACATTTACGACACGTTTGTGGAAGTCCAGTTGAAACCGTTACAGATTCAGGCTGGAGATACACTAAATTTTACCGCGGATACAGAAATTGTTGCTTATGCGAATGGATTTGTGCCGCATCACGTAGTAGCTACAGACGGAGCTAAAGCATTTGTAGCATGTAATGAAAGCAATGGAATTCCCATCGTGAACAAACCAACAAATAGCGTTGTGGTAGGTTTAGACATTCTTACACCAGGCGTCCATTATTTTATTGCCAACATCGATTCTACGTTTCGCTGCCATTTTGGTTTGCGTTTGAATGTTAGTGTTAAAGAGAACAAGTGTGTGGCACCAGCATCAAACCTTACTTGCTCGGATCGAGGACAATGCACCACTAACTTCACAACGCCAGACTTCAGTTGCAAATGTTGTGGCGGCTTCAGGGGTGATTATTGCGAAAAAGTGGACTATTGTTTCTCAAAGCCTTGCAAGAATAATGCAGAATGTCAAAACCTGGAAACTTCTGTTGATGGAAACACACATGTATGCATCTGTCAGCCTGGCTATGAGGGAAGAGACTGCTCACATGTCACAGATATGTGTCTGTCTGCTCCTTGTGCCCATGGCGGCCAGTGTGTGCCCAGGGTGAATAACTTTACATGTGACTGTCCAAAGGGGTTCATTGGTCGATATTGTGAAATAGATGTCAATGAATGCGATTCTAATCCTTGTATGAATGGTGCTTGTGTTGATAGACCAGGAGAATTTCTCTGTAATTGTTTGACAGGCTTCACAGGCCCTCGTTGTGAAGTTGACATTGATGAATGTTCCTCTTCACCTTGTCTTCACGGGACTTGCATAGATCAAGTAAATGGTTTCAAATGTCACTGTTTAGCGGGATATTCTGGTGTGCTGTGTGATTTCAATATTCAAGAATGTCTGCCGTCCAACCCTTGTCACAATGGAGGAAGGTGTATTGACGAAGTGAACGGTTATAGATGTGACTGTGGGCTGGGCTTTAAGGGAAGTCACTGCGAAATTGATGTTGACCTCTGTAATGACCCAAGCTTGTGCAGCAATTCTGTCTCGTGCACTGAAACTAGCGACAGGCAAAGTGTGCAGTGTACTTGTAAAGCTGGTTTTACAGGACACAACTGTGCTGTAAACATCAACGACTGCTTGTCAAGTCCATGTAAGAATGGGGGCACTTGTCGGGACAAAGTCAGTGGCTTCCAGTGTATATGTGGGGATGGCTTCACTGGAATCACATGTGATGACTTTGCAGAAAAATCCCCTGGTGAAGAATTCCAGCGGCAGTTGAGCGTAAAGCTGTTGACTGAAGATTGCAGACTTTTACAGATGCAGGGCCAGGCAGCAGTGACACACATTCAACAGGCAATGGCTGCAAGCGTTGCAGAGGCATGCAACTGCAGTTTCACCTCTTCAGACATTGCGGAAGGATCTGTGTTGCTGCAGTGTCGAAACAGCATGAGTGCAGAAGTCAGTATGCAAATCAAACCAGCCAATCATCAGCAGCTGATTTGTCAATTTCACAGTCTGCTCACACAGCGCCAGAATGTTATTGACTTAGGGCATAGTACTTTTGCCGTGCAGGTTCTTAGTGACGTCTCATATTGTGATCACTTGGATGACGAGGAAAGTCCTGTGGACGCAAGAAACCAAGAAAGACATAAAGTCAGTAGTTCAAGACATCTTGCTATAACTATATCATTGGTGTGTGCAGCCGTTGGTCTTATTGTAGCAGCCATACTTGTCTGTCTCAAGTTTCGGAGGACACGCCCTCCAGTCAAGAAACATCCTTCCAAGGGAGAGAATCAACTGATAGAGGACTTAAGTGCTGACTTGCTCTCTGCTGTGGCTCCTACACCCAAGTCAATGTATCGCACAAGTGGTGGCTATCACAACATGGCTTTCTCAGGGAGATTCAACCCTGAAAATCCTGTCAAATCACGCAGAGTGTGAACAAGAGACCACAAAAGCACAACTAGAGGGAATCTACCTTGTTAGTTGATGATCTGAACAATGCATATCTTAGTCATTGCTAGGACCAGCATGGGTTGTCATTCGATCATTGTTTTTTAATGGTCACTGGCCGAGTTGCAAACAAATAGTGAAATTTATATTTTTTCTTCCACTGTATTAAAACAAAGTTAATTTTCTAGACGTACTGTCACCACCAAGACACTGTTAAAATTTTATGTACAAATCGTTTCACTTCAGCGTTGCAAGAAAAATTGCTTGAAATATTATTGTTCAGTGAAAAGGAGCTTGCTATAGTCAGATTATCTATAGTCAAGTTGCAGAGACCTTTATAGAAAGTTATTTGATTTCTGCTTTAAAATCTGGCCTACAGCATTGTTATCAGTCAGAGAATTTTTTTTTTATCTTGTGTAATAACGGAAAAGCCTAGTTGGAAGAATCAGTGTCTTGATGTTTGTCAGATATTCTGCTTGAGGTGCTCTTTTTTAGTATCAAAAGCTTGTCGCAATGACTGGATGTCAGTGTAAATAACTCTTTTCGAGAGGGGATTGGAAATCGGTGAATGAGATGAAGTTTGTTGAAAACGTACTTTTTACCTACAATAGAAATGGATGGGGAATTTTATTATTTTAAACCAGTATAGTTGTGTGACAACATATTTTTAGTGCTATCAAGGAATTTCATCTTTTTTTGAATCGACAATAATCTTTTTTATGCTTGTGTTAGAGATGTAGTTCTGGTTGTCATTTCTCTTTATTGTGTGATTTTATTTAGTGAAGAGAAATGACAGAAGGAAGTATGTCTGTCATCCTGGCTTCTTTCATGAGAAAGATAACTTCTTTAAACAAAATTATTTTTTAGAGACTGCTATTTGAAGTAAACACAGGGGCTGCTGTTAGTCTGCCTCATTCTGCTTTGAAAATTAATGAAACCTAGTTTGCTTGAGTACATACTCCCTTGGATTGTTCACATAATAACCACTTAAAAAGTGTTACACAGAACAAGCTTTTGTTTTCTTTTTTTGTGCTTTTTTTAACAATGTTTGTGGGTTTGTGCATTTATTAGCCAAAACTCACTTTGACTTAAAAAAAAAATACATGAAAACTGTCAAATGAATTCTGTTTCATTTATTTGTGTGCCTTTCTAGAACTTTCACACTCCAATGAACAAGTCTATTATTGCCCATTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R6R1	Protein eyes shut homolog OS=Pongo abelii OX=9601 GN=EYS PE=2 SV=3
Q5T1H1	Protein eyes shut homolog OS=Homo sapiens OX=9606 GN=EYS PE=1 SV=5
A0A2K5V015	Protein eyes shut homolog OS=Macaca fascicularis OX=9541 GN=EYS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007221 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan
GO:0048495 all species →	Molecular Function	Roundabout binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_041213-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.