Gene detail

Detailed information of FUN_041560-T1 in Siderastrea siderea

Genomic Location: contig_52:4334827...4339825
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00276 all species →	Ribosomal_L23	Ribosomal protein L23	Family	Interproscan
PF03939 all species →	Ribosomal_L23eN	Ribosomal protein L23, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013025 all species →	Family	Large ribosomal subunit protein uL23-like	Interproscan
IPR019985 all species →	Family	Large ribosomal subunit protein uL23	Interproscan
IPR012678 all species →	Homologous_superfamily	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Interproscan
IPR001014 all species →	Conserved_site	Large ribosomal subunit protein uL23, conserved site	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR005633 all species →	Domain	Large ribosomal subunit protein uL23, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11620 all species →	60S RIBOSOMAL PROTEIN L23A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02893	RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.