Detailed information of FUN_041600-T1 in Siderastrea siderea

Genomic Location: contig_52:4739192...4748899
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_041600-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR051492
all species →		FamilyDynamin-binding and Rho GEFInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22834
all species →		NUCLEAR FUSION PROTEIN FUS2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_041600-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_041600-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
15TPM > 0
7Conditions
59.8Max TPM
4.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 4 5.53 54.55
holobiont · low.pH Control.temp 20 1 2.99 59.78
holobiont · control.pH_high.temp 20 5 5.59 42.03
holobiont · control.pH Control.temp 19 3 4.59 42.73
Whole organism 4 1 0.10 0.40
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 0.77 0.77

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP