Detailed information of FUN_041626-T1 in Siderastrea siderea

Genomic Location: contig_52:5281858...5286446
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_041626-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR052093
all species →		FamilyHomologous Recombination Repair MediatorInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46239
all species →		DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51CInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000400
all species →		Molecular Functionfour-way junction DNA bindingInterproscan
GO:0000707
all species →		Biological Processmeiotic DNA recombinase assemblyInterproscan
GO:0005657
all species →		Cellular Componentreplication forkInterproscan
GO:0007131
all species →		Biological Processreciprocal meiotic recombinationInterproscan
GO:0008821
all species →		Molecular Functioncrossover junction DNA endonuclease activityInterproscan
GO:0033063
all species →		Cellular ComponentRad51B-Rad51C-Rad51D-XRCC2 complexInterproscan
GO:0033065
all species →		Cellular ComponentRad51C-XRCC3 complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_041626-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_041626-T1 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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