Gene detail

Detailed information of FUN_041643-T1 in Siderastrea siderea

Genomic Location: contig_52:5461400...5464765
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_041643-T1

CTGGGAACGAATTGACTCAGTCcgccattttattttgttcGGTTGCACGATGTCAAAACGTAAAGTTCAATTTGCAGATAAAGAAAGCGAAGAGATCAAGGAAGAACCTTCCTTGGGACGGGTGAAACCTCACTCTTTGGATAGTGATGACGAAGACGAGGACGATGAAGGGAAAGTCGACGAAAAATATGTTTTGCAAGAGGAAGACTTGGAAGGGCAAGAAGATGCAACGATCGACTACGACGAAGGAATCAAAATAACGCCGTTCAACTTGAAGGAAGAAATGGAAGAAGGTCATTTCGACGCCGAGGGGAATTATTTTGAGAAGAAAGAAGAAGTGATTCGGGACGAGTGGTTAGATTCGCTGGACTGGGTCAAGATAAAAGAACGGGGAGAGCAAGCTCCAACGAACGCAGTTGACAATGGTGATAGCAATTTCGGAGATGCCGAAGAGCCAGGCGACCAAGTGAATGCTATGAAAGACATTTTAGGTCTCATTAAACCCGGTGAAACCGTTTTGAAAGCGCTGAGGCGGTTGGGTGGGAAAGAAAGCGGGCGAGGAAAAAGCTCTTCCGCAAGTGCACGCTGGCAGCCAAAAGCAAAGAAGCAAAAGGTTTCGGATGATAAAAGCGAAGGTTCGATATCGGATGAAGATAAACAAAGCCTTTTAAAGCTCACTGAGCTGGCGGATTATCTTCTTCAAAGAGGCTACTTCAGTGTTTATCAAGATACTTATGAAAGGATTGCGTATAAGGTCAAAACTATGGAAGAGAAACAACAGGAAGCTGACGAAGATGATGCCCTGGAGGCTGCATTTAaacaggggggaggggagagtgAGGACACATCCAAGGAGACTGAGAGCTCAGACAATTCTAAGACTGAGCCAGCCAAAGACGATGAGGTCTACTGGCAGTATAAGTGGGAAAACACAAAAAGTGCTACAGTCTATGGACCTTATTCATCAACTTGCATGCTAGACTGGAATAATCAGGGTTGTTTCAGTGATGGTGTGTGGGTTAGAAAAGTTGGTGAGGATGATGGACCATTTTATAATTCCAAACGCATAGACTTTGAACTCTACACCTAAGGCCATTCGAAATATGTGGTTACAATGTAAAAGTATTTGTGCTTGTGAAAAATGTCTAATTATCAGTTATTATGCAAACTTGTTAGCCAATATGATTATGTCCCTCTCCACAGGATCCCAAGCAGGTTTCATGtgagcacaggcagcccaagcacAGGGCATTTAAATAGTTGAAGGAAGGTTCAAGAATTTGTTAAGTAAAACTTACATTGTACTTACACTGTGCCAGACTACATGCAGACAACTGATTTCCTTTGTGTATTGGAAAAAAAAGATGTCTGCGAAAAAATCATTCGATTATCTGAAGCAACAAGTAGCACGCAGGTCACACAAGCCCAACTGGGTTCAACCTTACTCATCAACTTGCATGCTGGACTGGGTTGTTTTAGTGACAGCATTGGTGAAGAACAGTTGGTGAGCATGATGGGCCTTTTTACAATTCCAAATGCATAGACACCTAAGGCCACCTAAAATATAATACTTTTAGTCACAGtgtttttaaaagtatttgtgcTTGTTACAGCTGTATAATAGTAATTATTATACCAGCTGTCATGTTGTCATTGTACAAACTTGTTAGCTGAATATGTGGATGTTCATGCTGCACAGGATAGCCAAGCACAGTTTCATGTGTGTACAAATAGCCTAAGCATATGGCATTTGAACTGTAGGAAGGTTCGAGAATACACAAAAAACTTGCTTATGCCTTAGTAGCCTGCATGCACGCAACCACAATTTGAGCTAAAGACTCAACGGTCTTCCTTTATTTTCCCGTTTCAACGACAATAAGTGAACTTGAAAATCTTTGCAAACATGCTGCATTGAAACTTTTTGATGAAATTGACATTTTAAAGGTTTGGTTCTCTTCGCAAGATCCCTGTAAATTACCGCGGGAAATCTTCCAccaatttattattattattttgagaCGACAATATCGTAAAATGTCGTCTCTCTTCAATCCAAAGAGACCCCTGGATCACGATAAAAATCATTTGTGCGCGTGTGTGATCCCTATCTGATCTTTTGAATCACCTGCATCTTTGGTATCACCAAGTCTTCCTCTCGCCCCTGACGCATGTGACCCCTTGTACTTGTCATTTAACCATGCAGTCATGTCATTATCACAAGACAACAAAGGCATCATTCCTGTTTCGTGTATAGCCCATGACGTGGCACTGCACTGATCATTTACCCCTCCAAAGGAACAAAGCGCCATCGTAAAATGATCCGGAAACTTATCACTTTCTACAATTTCTAACACCTGATAAAAGTACAAACATTCACGCTTGAAACGGGAGAAAAATGGGAACTTGGTCCAGTCCCCATACTCTCACGTCCAAAATGGCGGGTTAGTTGATACAATAACAGTCGCATTATCTTGAGGCTTTGTGTGGAGTATTTTATTTGAACAGCAACACAATCTTTGTTATCCAACTCTCCTAACTGTGGATTCCCTCTTTTACTGGATGGTTCCATTTATTCAGCTTTAAAGGACCTGGGAAACGTGATGGATCACAGGTCACCTGGACGCAGCTCACTGCAGCTTTTATGTAGTCCATGTATGGTGATGCTTGTTTACTGATGGGTATTTGCAAGAGCTATTCAGGCTATTAAAAGGACAGACGAAGATTATCTGTTAATGATCGTTTTCATTAACCTCACTTTATCTTGTATGGAAAAAATGGGCCTGACAAAATATGGAGACTTTCCATGCCAGGAGTATAGTATGCATGAAAATATGACCTGAAAAATGTAAATGAGAGAAAAATTCAAGCatcttttaaaaagattgtCATATCTAGGTGAGAACGTCATCATTTGTGTTTTATGATCGGTACtgggttttcaaagaaaaaaaattcacacttATTTTGCTAAATCTGGGTGTTTGTAGTGCTAATCAGAGGCCTTCTTAGAGCATTTGTAAGATATGAGTCGGGGTTTTTCTAAACAATGAAACCGATTAGGCTTTAATGTTTCATTTTCACCcaccaaatacaaaataaaggcTTCATGTCAAGAATTTGGTTTCTTTATCTCATGAATTACGCTCAAAATTTCATTCTGCATGGCCGTAGAGGGGCATGGAGTGTTTGTGGCAAAAATCTAACAAACCTTAATAAGCCAAATTTTTCTCAACTGATTTTGATAATTGGGTCACTAAAGTACATACTGGTGTAGGTATGGAAGTTATGCAAGAAGGCAGGTATTaaaatatgttgattttttgaaaaatggcaattttggGTAGTGATTTTGACCTCAAATTTGAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02213 all species →	GYF	GYF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003169 all species →	Domain	GYF domain	Interproscan
IPR035445 all species →	Homologous_superfamily	GYF-like domain superfamily	Interproscan
IPR039905 all species →	Family	CD2 antigen cytoplasmic tail-binding protein 2/Lin1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13138 all species →	PROTEIN LIN1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13099	CD2BP2, PPP1R59; CD2 antigen cytoplasmic tail-binding protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.