Gene detail

Detailed information of FUN_041780-T1 in Acropora pulchra

Genomic Location: ptg000035l:7411466...7426170
NR annotation: XP_044180310.1, LOW QUALITY PROTEIN: dynein beta chain, ciliary-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_041780-T1

ATGGCGGCGGCATTGCAGACTATCGAGCGAGGAACTCTGTTGGCGGAACAGCTTAAAACTCAAATGCGCCACGAGAAGATGGTGTTGGAGCAAAAAAAGGAGGGTAATCTACAGTTGCTGCAGCAGATTGGACAGGACAAAGCAATAGCAGAGGAGCAAGTCAAACTTGTGAAAAGGCAACAAGAAAGAATACAGAAGCTAAAGAAGGCTCTTCCTGAATACCAGATGGCACACGAACGCGCCGTGTTCAAAGCAGCAGCTGTTGTGTCAGAAACAAAGCGAGTTTTGAAAAATCTTGACGCCTTTGGACTGGCAGAGTTACGAGCACTGCAAAAACCAGATAACGAAATTGAAGATCTGTTGGCAACTATTATCATTATTGTGAAGTCACCTTCCTCCGATTTGACTTGGAATAAGGGAGCAAAACGACTGATGGCGAATTTAGACAGGTTTCGTGAAGAGCTCGCTGTTTTTGACGAAATGGAAATATCGGACAGTACATTGGAAGTGTTAGAACCGTATCTTAAAAAGCCCCATTTCAGTGGAGACTATCTCGAAAGAAAAACTACCAATGCTGCAGTGGGTTCCCTGTTACTTTGGGTCAAGGGAGTGTTCAGATACCATCGCATGATGCAGTCCAAAGTCAAACCTCTGCACTCTAAAGTGTCAGAGACGTCCTCAGCTGTAGAGCAAGCTGTTGGTAAACTTTCCTCCATGGAGAGTAAGTTGAAAGATCTGGAAGAACGCCTCAAATCTCTTGCCACTGCCTACGAAGAAGCGTCAATTGATAAATGTAGACAGCATGAATTGACACAAACCTTGGACTCCCAACTTTCCCAGGCTGCTTATTTTGAAGAGGTACTGTCAAGCGGTCGCCAAAAGTGGCTGGAACTGCTAGAATCCATCAGCGCGCGCGAGGAAGCTGTCGCCGGTGGAGTCGCCATCGCAGCTGCATTTGCCTCTTACTTAGGCCCATACACGTTCAAGTTTCGTCGCGAGATGCTGACGGAACACTGGCCACGGTGTTTGAATGAACGTGGAGTGAAACTTGTGGTAGATAGCTCCACAGTTTACGCTGGTGTTCCGATGGTTATGGTTGATCAGGATGACACTAAGAGGACCAGTCCAGACAAGGAAGAAGTTCCTACACAAGCGGATGAAAACGCTACCCAAGGTCATGCCACTGCACAAAATGGAGGTAGCACCGATGAAGGGGAAGGAGGACACGAAAGACCTCCCAGTGCGGGAGCAGAGAAGCAAGATTTCGAACTAAACGAAAAATATGACTCAACACCTTTGGAAGACGCCAAAGCCGATTCAGACCATTTCACGGTTTTAACAGATAAAGATCGAGTCCTTAGCCACGCGAACCTGTCAGAGTACGACTCGTTTGTCTTGGCCATACTCAAGCTGTTGTTGGGAGAATATCACATTCGAAGGGTTCTCACTAAGGGAATTGGACCACGGAAGATAGAGAATGCCGTGTTGGCCAGAACGTCATGGCAACGTGTACCCCTTCTGATGGATCCTTATGAGAAGGGACTTGAGCTTATAAGGACCGTTGAAGAAGGAGAAAACCTTTTAGAGATTGACCTCGCAGAAAGTGACCCTTCTGCTATCTTGAAGATTGAAAAGGCCATCATAAGTGGTACAACGCTGGTGTTGTACAACCTTGACCGTGATGTGGACTCTATGTTAATGCCTCTCATTTATCACTTTACTACTTCTATCAGTGATGAACCTGAGAAAGAATGTAAGCTGGTTAAGTTCGGTTCCCGTCGGGTCATGTGTCATCCCGAATTTCGCTTATATCTGGTATCCAGATCCTCACGGCCAGCGTTCAGTACCGAGGTGTCCTCTGTCACAGCGTTGGTAAACCTGCGGCTTGACGAGGAAGCTTTGGCCGAGGAAATTCAGTTGGAAGCTTTTCAGCGTGTTCAACCTCGTCTCAACATTGAGGCTCGTAAATGCATGATGGTAATGATGGAGTTAATGAAATTGTTTGGGAATATTGACAACAAGCTGATAAACCTAGTGACTTCACGCCAGGGGACGGATATCTGGGAAGAAACGGAAGTTATCGCCGAGCTTGTCAATTGTCGGACAGAGGTCACGAGACGCCTCACACATACCCTGGTCAACTTTAACAAGCTGCGGGGCCTGCGCGAATTGTTCTTACCTCTGGCCAAACGGGCCGTGATGATGTTCTCACTCTTGCGATCATTGAGCAGCGTGCAGCACGAGTACCGCTTTTCCTTGGAATTTTTCCTTTCCCTATTCCGATCGGCAGTGGGACAAGACGTGGAACCCCCGTCGGAAAGATTAGAGTACGAATCAGATCCTGAGGACAACGAAGACACCGAGGAAGGGGATAAAACAGAGTCAAGAACAACCATTGCAATCAAGGTTTTTGCATCAGATAAATATGAAGATAAAGAAAGTCGCAGCTCTTCCCGTAGTAAAAAGACCCAGAAACGCATCTCAGTTACTCTTCCTCCCGAAGTGGTGTTACCATCAGCTGGTTTGGAATACACGCCCCTCAGCGACGAAGAGTCGCTCCAGCTCTCAACCTCGCTCTCTCAGTCATTCTACAGACATGTCAGCAGGAGCTTGGACCAACGTCACCGCCTTCTCTTCACCTCGTTGCTCTCACTATGCAAAATGGAAAAGCAGGAAGTTGGAGCTCGTGAAGAAATATTCCTTCTTCTTTCTGGAACCATATCTTCTCCAGTCCCTGTTCTTTCAGACTTTGATCCAACGCTTCTTCAGCCGAGCTGGATTGCGCAAGAGGCTTGGGAGCTAATCCTTGCGGTGTCCACTCTCAAAGGCCCCATGGATAGCATCTGCACCCATATTGCTGCCAATCCTGTTCCGTGGAAGGACTGGTTCAGCAGCGAAAGGCCTGAAACTCAGCCGCTTCCCGTAGAAACTGAAGGCGCAGAACTAAGTGCTTTACACAAGTTGTTGATGATTCGTTGCTTGCGGTTTGATAGATTCGAACATGCCATGTGGATGTTTGTGAAAAATGAAGTTGGCGAATTGATCGAGAAGTCTCTTCAGCCCGTTGATGAAGTCCTATCCAGTATCAAACATTCAACTCCAATTGTTGTGATTTTGCCAGAACGTTCATCTGTAAATACACCATTCAAGGTTTCTCCTGTTGAAAATATCAAGCGTTTGGCAGAGACCAACAAAGTGCAGTGTCAGCAAATCTCTGTTTGTCAAAACCAAGAAGAGGCCATTGAAGTTGCCTTGGCGAGGGCAGTTCGAACGGACGCCTGGTTGGTAGTAGAGAACCTTCACTTGGCTTCCACAGTCTGGTTGCTTCATCTCTACAGCCGATTGTCAAGGCTTCAGTTGCAAGCCGAAACTTCTTCAACACCGTCTCAGTGGCGCATATTCTTACTTTGTGAGCCCGCGGATCACTTGCCAGTCGGACTTCTTTTGTTCGCACATCATCTGGCCTGGGACGTGATACACAGAGAAGGACCTGCATGCGAGAACCTCAGTTGTACAGATTTGGACTTGAAAATCGCAGTAACGTCTACACTTGAGTGTGTTCCTCAAACGTATTGGGAACAAGCTCGAGACCAGTCTCTTGCCGTTCGCTCTACTTTGTTTGGCTTGTGTGTTAATCACAGTGTAATGCTCATGCGCCAACAACTGGGTACGCGATCATCCAGCGGCAGTTATCCATTGTCTATCCGTGACTTGTTGGTGTCATTTGAAATGGTTTTTGCATGGGCTTCAAAACAAGGTGGCTTTGAAGCACCGCAGATTCAAGCACTATCGGATATCATTGCTCGGGGAGTCTATGGAGGGAAAATCACCAACCCCTGGGACCTTCGCTATGTCGAGATTGTAACTCGTCACGTGATTAAAGAGACAGCACTTCAACAGCATTCGTCGCTTACCCTCGGTTCTACTAATGTCCCTGTGCCACCTGCCAACGTGGACCCAGCTGATTACAGCAAGTGGTTTAAAGAAAAGACTGGGACCGAAGACGCTGACTTGAACAGTATCCAAGCCCTAGGGCTAGATGCCAGCGTTGAGCGAGAATACAACGAAATGCGCGCGTCAGAGTTCATTCGCAAGCTGGATAAACTGTACCGAGACATCAACACCACTGCAGCGCTTACTGAAGATTCTTTCCCTGGAGTCAAAATAAATATGTCTCGCTTGCGTTCATCAATGGATTTATGCCTGGAACAGCTTCCAACTCTGCTAAAAATAGAAGTGGGTGGTGCCTTACCAGTAACTCAACTCCTGCCGCGCGTGCTTTCACAGCTGCGTGCTTTGTCTGTTTATTCGGAGTCTGGCAGTTCTGTGGGAGCAGAGGAGAGAATGTCTGAGACTATGGGTTACGTAATACAAATGGAATGTCAGTGGTTCAACTGTCTTCTGTGTTTGGTGCGTCATTCGTTGCAAGCACTAGAGCAGTGTGTTATCGGAGGCTCGACAGCTATCTCGCCAAACCTCCTACCTGTTGTTGACGCACTCCAACAAGAGATAGTCCCAGCTGATTGGTTGCATCCGGATGGCCGACCCTCTCCGCACGCTCTCTCATCGTGGCTCAAAGATTTAAATGGACGTCACAGGCAGTTCAGCGAATGGGTTCGTCGTGGTATCGTTCCTGACCCTAGCTCCGAGCCTTTAGTAGGACGGGGTCAGCTTACCTCTGTGTGGCTTGGTGGCCTGGCCAACCCTGGGGCCCTCATGATGTCACTTCGTCATGAAAAAGCCGCCATGCAGGGATGCGCTGTCGACGAGGTGGAGCTCCGCTGTTCCCTTCCAGCGTCCCATTTGTCACGTAAAGATAGCGCTGCTGAGTCAGAACAGGGTCTGCTTGTGACTGGACTGTACTTGGAGGGTGCGTCTTTTGACTTTGACAGAGTGTGCCTTGTGGAGGCAAAAGCTGCAATGGTCAAGTTACCAGACCTCTTTGTGTACCCTGTCATCTCTGATGAAGACGAATCCGGCGTGGATGAAAGGAACGCGGCAGACAGTCTCGAATTTTACCGCTGTCCAGTGTTTATGAACAGGGCTCGACAGTGTTGCGCGTTCTCTTTGCCAATCAAATGCTCCAATGCCTCGGAATATTGGATCTTAGCTGGCGCCGCCATAGTTTTGGACCCCGGAAACTCATTCAGCTCATTGCAAACAATTTTAAGTAGTAAATGCTAG

Transcript

FUN_041780-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q39610	Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 GN=ODA11 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002079 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03028 all species →	Dynein_heavy	Dynein heavy chain region D6 P-loop domain	Domain	Interproscan
PF18198 all species →	AAA_lid_11	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF18199 all species →	Dynein_C	Dynein heavy chain C-terminal domain	Domain	Interproscan
PF12777 all species →	MT	Microtubule-binding stalk of dynein motor	Domain	Interproscan
PF12781 all species →	AAA_9	ATP-binding dynein motor region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042219 all species →	Homologous_superfamily	Dynein heavy chain AAA lid domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR004273 all species →	Domain	Dynein heavy chain region D6 P-loop domain	Interproscan
IPR041658 all species →	Domain	Dynein heavy chain AAA lid domain	Interproscan
IPR043160 all species →	Homologous_superfamily	Dynein heavy chain, C-terminal domain, barrel region	Interproscan
IPR041228 all species →	Domain	Dynein heavy chain, C-terminal domain	Interproscan
IPR024743 all species →	Domain	Dynein heavy chain, coiled coil stalk	Interproscan
IPR035706 all species →	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10676 all species →	DYNEIN HEAVY CHAIN FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0097729 all species →	Cellular Component	9+2 motile cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_041780-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.