Gene detail

Detailed information of FUN_041850-T1 in Acropora pulchra

Genomic Location: ptg000035l:8220202...8227282
NR annotation: XP_015759446.1, PREDICTED: putative GPI-anchored protein PB15E9.01c isoform X1 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_041850-T1

TTTTTCGTGAACAGTAATTTTCCGCCTCCGCTTTCGCTTTGCAATAATTTCTCCCTTTGAAATTGAGGGTTTATGGCGATGATGTATACTTTTTACCGCTTCTGGCTTTGTGTGCTTTGGATAGCTCCCAGATTGTGGACAATGGTAGCCTCTGAGAGTGGAAATCCCTCTACTACTATAATGCATCGACCAAGTCAGACAGTGACCAACAAAAGCATGATAACCTCATCACACAAGTCAAGTTCATTGCCCAGTGTGAGAAAATTACCGACCAAAACAAGCAAGATGTCCTCTCACATTACAACTGTATCACCAAATAAGACAAGCCCTATGTCTGCAGCAACATCACTCACTGTAACATTGTCATTTAACTCAACTGTCTTGCCATCAGGAAGTGTGACCACATCACCATCACAAAATAGAACTGTCATGCCGATCTACAACACAACTGTGATGCCAACATCACACATTAAAACACTGTCATTTAACTCAACTGTCTTACCATCACAAAGTGTGACCACATCATCATCACAAAATAGAACTGTCATGCCGATCTACAACACAACTGTGATGCCAACATCACACATTAAAACACTGTCATTTAACTCAACTGTCTTACCATCACAAAGTGTGACCACATCATCATCACAAAATGGAACTGTCATGCCGATCCACAACACAACTGTGATGCCAACCCAGAACATGACCATCATGCCTTCATCAGCACATAGTGTTGTACCCACCTCGACTGTACATCCCATGCCTCCAGCTCCAGAACGAGGAAACTTCAGTGTGAAAGACAAGAATGATACAGTTTGTCTTGTTACCGACATGGCTGCCATGTTTGATGTTGAGATTAAATCCAAGAAAATGACAATTCGGCTTCCAACAAATGCCGCAGCAAGTGGAGAATGTGATGAAAATCACAATGAACCTTATATTACCCTTGGTTGGAATTCAAAAGAAGGCTCTTGCAACTTTACCATGTATTTTACTAAATTTGGTAAAGATGTCCAGAGTGAGAGATGGGCAGCTGGAAATCTGACATTTTCATTGCTGACTACAGTTGGGTCCAATGAGGCTGCTCATTACACATTTAGGTCAAAGGGGCCATTGAAACAGCTGTCAGCCAAGGTTGGCCATTCTTATCAATGCCTCACCAGCACAATTAACTTGGATTTGACTGGTGTCAATAGTTCATTGGTGAAAGTATCAATGGATAAGATTGAGTTTCAACCTTACGTTAAAAATGGAAAACTAGGAGAAGCTGAGAATTGTGAAACACATCCAACACAACATCCATCAACAACAACAAAGCCACCAAAGGGAAAACCATCAAACCATGCTGTGGCGATTGCTGTTGGTTGTTCTTTGGCAGGTCTTGTGCTTATTGTAGTAATTGGATACCTGATTGGCCGACGCCGTTCTCGGAATGTGGCAGCAGGTTATCGCAAGCTGTAACTGTGGTGCTAATGCATCTTACTGGAAAATCTCTAATTGGTGTTTGGTGCAATTTGACATGAGCTAATTAAAATTTTATTGTAAGGTTAAATTCTTGTTCATGTTTTATAATCTTGTCTTAGTTAATATAGGTTAGTTAGTTACCGCACTCAGCAGTTAAAAGCCTGATATATATTTTAGTGATCACAGCACCCATAATTTGTCTAAATCATCAATTTTTGACAGGTGTAATAGTAGTAATAATTTTTATTGTCATTCTTATTGGTAAAAATTATTCTTTGGTAAGTGGCTTAAATGTGTCAAAATTGTATCAAGTAATTCAAATGCCAAACTTTAGATTAGCTTTGTCACAGGCAGCATCACTGGGAAGATCAATAATTTTTGAGTGGTGGTAAAGTTTGAATAATTTTAGTGGCTTCATTCAAAATATGTAAACTGATAATTTGTGACACGTAGATTTCTAGTTAATTTTATTCAGCTTTCTTTGTGAAGAGTATGGCATCTTTTAACATAAGGGTTAAATTAGAAGAGTCTTGATTAAGTGTTTGCATATTCTTTTTAGTTGCAGTTAGTCAGGCAATGGAAGCTGCAGGCCTGTGTTAAGTTGTTCATAATACTTTATATGATTAGGAGTTTCCAATAAAAGGTTGTTTCTAATGTATCATGGAGTATTGTCTAACCATTATGGTTCCTTTGAAAACAACAGCTTTGTTAAGTTGTGGGTGAGCTCTCCCTTGTCATCTTCAAGATACATGATTCTAAGGTGCATCTATATCTCACATCTTAGTCCATTATGTAAAATTTTAAGAATATTTAGGATTTTCCAGAAGACAGAGATAACTTCATTCTTAAGTGGTGGTTACCAGTGTAGAGGACCTTTGCAAAGAATTGTTTGTCTAGCCACACAGCCTGCCCCCCTTCCCCCCCCCCCAAAAAAAAACAAATAAACATAATCAAACAGTACTTTCTTTCAACTGTGCCCAATGGTTGGTGGATGTATGATTTTTAATTATTGTTATTACTTTAGTGTTGCCGCTGGCAGAGGGGATAAATGCCAGCTTTGTACTCGTATGAGCCATGTAAGCTGATAAAATGGCATTCCACTCTCTTGCATATCACCCTTCATTAAAGGAACCAGTAATGGCATTGGATATAGAACTTCTGGGACCCACTCCCAGTTGTGTGAGACCCAGATGCATGTATGCTACAATGGGGTATGTTTTCTCTTTTGAGGCCTAGTGTATTATCTCAAGATAAGGAGAGAAACATACAGTCAGACTGCCTTAGGGTGGGGAGGGAAAATCTCTTGACTTGTACATTTGTAACCTCTTTGTTGGTAGGTAATATCCTTGTTAAGTGTTCAGACTTGATGCTGATTTTGCCTTAAAAACATGGAGTTCAACGCGAGTCTTTCATGAAATCAGATTTCTAATGATAGTGAAAACAAAACTTTCACCATCAACAGTAATGCACTGCTAATTAATTTTTTCCCCGAAATTGCCTGGCTGGTTTGATTACCACTTGGCTTGTCAGTGATGCAATATAAAATTTATATTACTGTAAATGGTGGGCCGCGGTGCTTTTTTTTAGCAATGTTGATCAGAAAATAGTGATTAAACTGGCAGACCTCCTCCAAAACTTCCACAATTTTCTTTATCCAATTAATTTCCTTCACTGCCATCGTTATACGACTGTTTTGCGATATTAACACAGTCGTTGGACCATGAGGAAAGCGGAAGCAATATTTGAATGCAACATTCGCCCTACACGTACACAGCGGAAATAGTGGAAAAGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P05300	Lysosome-associated membrane glycoprotein 1 OS=Gallus gallus OX=9031 GN=LAMP1 PE=2 SV=1
P49129	Lysosome-associated membrane glycoprotein 1 OS=Cricetulus griseus OX=10029 GN=LAMP1 PE=2 SV=1
P11279	Lysosome-associated membrane glycoprotein 1 OS=Homo sapiens OX=9606 GN=LAMP1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21222 all species →	Lamp2_2nd	Lysosome-associated membrane glycoprotein 2, transmembrane segment	Domain	Interproscan
PF01299 all species →	Lamp	Lysosome-associated membrane glycoprotein (Lamp)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002000 all species →	Family	Lysosome-associated membrane glycoprotein	Interproscan
IPR048524 all species →	Domain	Lysosome-associated membrane glycoprotein 2-like, transmembrane domain	Interproscan
IPR048528 all species →	Domain	Lysosome-associated membrane glycoprotein 2-like, luminal domains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11506 all species →	LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0072594 all species →	Biological Process	establishment of protein localization to organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_041850-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.