Gene detail

Detailed information of FUN_041871-T1 in Acropora pulchra

Genomic Location: ptg000035l:8464160...8466214
NR annotation: XP_044180014.1, zinc finger protein ZIC 4-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_041871-T1

ATGGAGGCTGGAGCGATTACGCGAAATTATCCGAATATATTTGAATGTTTGGGCAGTCACAGCTCCGCCCTTCCCGCGTTTGGGCTTCCGAGATCTGTTATCCCAGAGAACATTGACACATCCCAAGATCATGGTTTTATGCGGGCAGATTCACCGTTGCATTTGACGGGTTTCAGGCCAAGCGCGCACGAGTACATTCATTCTCTCTCCGGGGGCAACTCACATGGAGCTTTCAATTTACAAGCTAATTATCCTGTACCAGCTGCTTACTCTTCACTGGCTGCTCGCGCGGGAAGAGATTTCCTGCTACGCCGTGAACACACAGTAACGCTTCCATCAGTGGGACCGTTACCGCCTCACACCATCCCTATGGACGTGACAGCTTCATCGACGAATCTGGTTGTCTCACCACCGCCCCCTTCTGCGTTTCAACAAACGATTTTTACAACATGCAACGTTGCACTCAATGCAATTAGCCTGCCGAGCCTTTCGAACCCTCCTGACCCAGTTGGAACGCCGCAAACTCTCGGAACTCATCAAGACGTTCAACACCCGCCCGCCCAAATCATTTCAAGTCTCGCGCAGGGCGTACAAGTCTCATCTTCTTCTTCTAAAACAATAGCAACAAACAAAAGTATCAGCGATCCTCAAATCGAAGCCCCTCGTGTCTCTGTCAGCGTTGGTGAGAGACAATCTATCAATGCTCTTCTTCGCCCAAACCCACTCAACGCGGCTATCAAATCCAGTTTGGTTCCTTCTCCCACAAGTGCCGTCCCGTCAATGGAACTATCAACCAGCGGGGCCTTTCTTCGCTACGTAAGGCCGCGGGAAAAACAGGAGTTTTTATGCAAATGGACCCTGTTTAGAGACAAACTCTCAATTCCATGCGACAATAGCTATCCTACAATCGAAGATCTAGTCAAACACATATCTTTAGAACACGTGAGTGGAACAGATGGGAGTCTTGCTCATGTGTGTTTGTGGCATGATTGTCACAGAGGAGGAAAGCCGTTCAAAGCCAAGTACAAGCTTATTAACCATATTCGCGTACACACAGGCGAGAAACCCTTTCCATGTCCTTTTGCAAACTGCGGAAAAACGTTTGCACGTTCAGAAAACCTCAAGATTCACAAACGCACGCATACGGGAGAGAAGCCTTTTATGTGTGAGTTTCCTGGGTGCAGTCGCCGTTTCGCGAATTCAAGCGACCGCAAGAAACATTCACATGTTCACACTGCTGACAAGCCATATCTCTGTAGAGTTCCTAGTTGTGGTAAAAGTTATACTCATCCAAGTTCACTGAGAAAGCATTTGAAGATGCATTTAAAGGCTGCGGCCGGAGGTCTATCTTTAGACGGCAACACCGAAAGTATGGCTTTGATATCTGCCCAAGCAGCCGAACTTCAGCTCAACAGTTCGACTACTAACACTCCGCGGAATTTTCAGTCGTGGTTTCCTCCCGCACAGCAGTCACAGAAATTTACCATTCAACAGACATCGGACGATTTGCCTTCGTCCGTAAAAAGAGAACCCGTTCACTAACTTGTTTAGTCAATCCAACGAAGCTACATTTTGTCATGATGTTATTTTCCGCAAAGAAAACAAGAACTCTGTTTTAACGCTTGAGATGCTTTGCTGGTCGCGCAAGATCGCATTGGTTTTCGATATGAGAAGTTCAGCTAATCAGTGTTTTAATTATTGCGCAAACGCCAAAAAGGTTGTTCGTAAAAGCTTTATTTAAAGTGGACAAAAAATCACTAGACATAAAACATTTTTGCAATTATTTTCTTTTCAATATTTCCGCACAGATGTTAGAAATCATTTGATAAGTTAGTGATCTTTTAATCAAGAACAAATTTAATGAATTCTTGTGCACTATCATAATTTGTATAGAGTGATATTTAAGGAAAAATTGTTTAAAATAAGGTGATATATTTCACGCTCATTTGTTATCAAATCAAATTTTTTTCTCCAAACGAGCCAGAGAGTAATTTGTTTTTCCAAATGTGTTTTCTCAGGTTGGTCCCCAAGTTTGTAAAATGTCGCACAAATAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9IB89	Zinc finger protein ZIC 5 OS=Xenopus laevis OX=8355 GN=zic5 PE=2 SV=1
O73689	Zinc finger protein ZIC 1 OS=Xenopus laevis OX=8355 GN=zic1 PE=2 SV=1
Q8JJC0	Zinc finger protein ZIC 1 OS=Gallus gallus OX=9031 GN=ZIC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001009 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF18366 all species →	zf_ZIC	Zic proteins zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR043359 all species →	Family	C2H2-type zinc-finger protein GLI-like	Interproscan
IPR041643 all species →	Domain	ZIC protein, zinc finger domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45718 all species →	TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_041871-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.