Gene detail

Detailed information of FUN_041916-T1 in Acropora pulchra

Genomic Location: ptg000035l:8841964...8847139
NR annotation: XP_015753584.1, PREDICTED: cyclic nucleotide-gated cation channel alpha-3-like isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03041	Cyclic nucleotide-gated channel alpha-2 OS=Bos taurus OX=9913 GN=CNGA2 PE=1 SV=1
Q16280	Cyclic nucleotide-gated channel alpha-2 OS=Homo sapiens OX=9606 GN=CNGA2 PE=2 SV=2
Q28718	Cyclic nucleotide-gated channel alpha-2 OS=Oryctolagus cuniculus OX=9986 GN=CNGA2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000765 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR050866 all species →	Family	Cyclic Nucleotide-Gated Cation Channel	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR003938 all species →	Family	Potassium channel, voltage-dependent, EAG/ELK/ERG	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45638 all species →	CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005223 all species →	Molecular Function	intracellularly cGMP-activated cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017071 all species →	Cellular Component	intracellular cyclic nucleotide activated cation channel complex	Interproscan
GO:0044877 all species →	Molecular Function	protein-containing complex binding	Interproscan
GO:0098655 all species →	Biological Process	monoatomic cation transmembrane transport	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_041916-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.