Gene detail

Detailed information of FUN_041920-T1 in Acropora pulchra

Genomic Location: ptg000035l:8873828...8878653
NR annotation: XP_015753754.1, PREDICTED: COP9 signalosome complex subunit 6-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QQ21	COP9 signalosome complex subunit 6 OS=Bos taurus OX=9913 GN=COPS6 PE=2 SV=1
A7TX81	COP9 signalosome complex subunit 6 OS=Sus scrofa OX=9823 GN=COPS6 PE=2 SV=1
Q5REY0	COP9 signalosome complex subunit 6 OS=Pongo abelii OX=9601 GN=COPS6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13012 all species →	MitMem_reg	Maintenance of mitochondrial structure and function	Family	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033859 all species →	Family	COP9 signalosome subunit 6	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR024969 all species →	Domain	EIF3F/CSN6-like, C-terminal	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10540 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000338 all species →	Biological Process	protein deneddylation	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12179	COPS6, CSN6; COP9 signalosome complex subunit 6	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.