Detailed information of FUN_041942-T1 in Siderastrea siderea

Genomic Location: contig_53:3997649...4002428
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_041942-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR014371
all species →		FamilySterol O-acyltransferase, ACAT/DAG/ARE typesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10408
all species →		STEROL O-ACYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004144
all species →		Molecular Functiondiacylglycerol O-acyltransferase activityInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0008374
all species →		Molecular FunctionO-acyltransferase activityInterproscan
GO:0019432
all species →		Biological Processtriglyceride biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_041942-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_041942-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
5TPM > 0
7Conditions
14.0Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 3 3.92 6.65
unannotated 1 1 13.99 13.99
live coral tissue/skeleton 1 1 12.19 12.19

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP