Gene detail

Detailed information of FUN_042050-T1 in Acropora pulchra

Genomic Location: ptg000035l:10083376...10088140
NR annotation: XP_015752095.1, PREDICTED: mannose-6-phosphate isomerase-like isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_042050-T1

TATATATATATGGGACGTCTTATGGATCTAACATGAACGCCTTACCCCCCTCTCCACGTATACAAATATTTTTATTTTTCCAATGTAGTTTGTTAAATCCTTAGTATGGCTTCTCTGGCTGGATATGATAGTGAAGTGGTTGAATTAAAATGTGCTGTTCAAAGTTATGCTTGGGGAAAGATTGGTTTAGACAGCACTGTAGCACAACTTTCACAGCACTCTCCTTCATTTGAGCTTGAAGAGGATAAACCATATGCTGAGCTTTGGATGGGGACACACATAAATGGTCCATCAAAATTGCTATGTGGAAATAAAGAGGTGTTGTTAGCTGAGTGGATTGATAAAAATACCTTTGTTTTGGGAGCTACAGTCAAGGAAGCATTTGATGGAAAGCTGCCATTTTTATTTAAAGTTTTATCAGTTAATAAAGCACTGTCAATTCAAGCTCACCCAAGTAAATCTCAAGCAAAACAACTTCACATGGAGAGACCTGATGTCTACACAGATTCCAATCACAAGCCAGAGGTGATCATTGCATTGACTACTTTTGAAAGTTTATGTGGCTTTCGCCCATTGGCTGAAATCAAGAAATATATCAAGACTATACCTGAGCTTGCTCTTATCATTGGGAAAGAAGCTGAAGATGCCATCACAAGTGGTTCAGATTCAGAGGCCTTAAAAACAGCTTTCAGTGCTCTGATGAGAAGTAAACCTGATATTGTATCCAAACATCTACACAATCTTGAAGACAGAATATTAGAGATGAAAAGGTTGGAAATGGACATTTCTTCAATCTGTGGTGACCTCCTTCTTCGATTAACCAGCCAATTCCCAGAAGATGTTGGTTGCCTTTGCATTTATTTCTTGAACTATATCACCCTGAAACCTGGCGAGGCAATGTTTCTTGGGTCAAATTTGCCACATGCCTATCTAGCAGGCGACGGCATGGAATGCATGGCCTGCAGTGATAATGTTGTTCGAGCTGGGCTGACACCAAAGTTGAAAGATGTGGATACTCTCTGTGAAATGTTGGATTATCGGTGCCGCACAAAAGAAGAGATTATTTTCTCATGCACTCAAAGCCCAAACAATCCATTTGTTACAGTTTATGATCCTCCTGTACCAGACTTCACTATTGCCAGGATACAGATTCCCTCAAGCTGTTCATCATACACATTTCAAGCACTGAATGGACCAAGTATTGCCATTATGATTTGTGGATCAGGGGGCATAAACATTTCTTCTACTAGAATAGCTTTAGGACGAGGAACTGTTGTATTTATCTCAGCAAACACAACTTTTGATTTCAATAACTGTGATGAGGTAGACTGTGAAATATATCAAGCATATTGCGTTTTATAATGGCACGTACATGACCGTGTATCCAAAAAGAATTATTAAATTATTACAATGATTGTTTCAACTACAATTATTAGCTTTCATTCCTGCACAGCAACACGATTAGCGAAAAGCGCTGCCATATTTGTAATGTTTTGGCGGTAAAAGAGGATTGAAGTCTCGCTTCAACTTGCGAAAGATGTTTAGTCTTGTTTTTTATTTGACCAACTAGTTGGATTTTACTAAAACAATTATTCCTCTCGCCCTCATAGCCTCTGAGTCAATAGCCCATTCGGCCTTCGGAATCATGGGCTTTTCATTGACTCATTGACTCATAGCCCATCCGGGCTCAAGGAATATTGTTAATTAGTAAAATCCAACTAGTGGTCTATTATCAATGCTGCATTCTGATTAGTTGAACTACAAGTAGGCTATATGTTATAGTCCACTAGTGGTAATTATTTTATATATGATACCCTATAATGTACCGTTATATAGATATATCATATATAAAGTAATTTTTACCCCACTAGTTGCGAAAACCACTTATCATATTTGTAATGTTTTGGCAGCAAAAAAGGATTAAAGTCTAGCTTTAACTAGCGAAAGATGTTTTGTCTCTATACTTTTTTGACCAACTGGTTGGATTTACTAATACAATAATTATTATTCCTCTCGCCCTTATGGCTCAATAGCCCCTTCGGTCTCATGGGCTATTGACTCAGAGCCCATTTGGTCTCGAGGAATAATTGTTACCGGTAATTATGTGGGTTACATTATTTTAGTTGCAAAAGTACTGAAAATCGTCACACAAGTCAGTTTCCTGACAGGGTAGGGAAAATTACTACTAGCTGGTCAGGCATTTATATGATTTTCCTATTGTTACTTTTGAAGGGTTATAAAAGGTGTTTTGTCATGAATAAGGTCTTGCTTGTTGCTTCTATTGTTCTTACTAATTAATGAATCTGATTACAGCAATGAATGAAAGGTCTTTTGAAACACAGGTTGAGCTTCAATTTCAGATCTGTTTAAAAGAAAGTTATGCACATTTTTTCAGTGGTGAAATTTGTTTATGCCAGTCACCATAAGCACTTTCGCCCCCGGTTTGACTTACTTTTTAAAATTTCTTTCGTTGCTTTCTCCTCCGCCAGCCATGTAAGTTTCTTGTTTTCCTTTTCTATTACTTATTTACGAGTCATGATACCATCTGTGGCATTTTAACTTATTTAATGTATCACAGTGACCCATAGTGCATTAGACGAACCAATAAAATCTTTCCTAGAGTGGTGCATCCCTTCTTCTGAACTGATGCACCATATGCAACTGGATGGTTGATCCTGACCTTTCATCCCAAAGGAAAGAATCCTTGATAATTCGCAAGTTGTGATTGGTTGACGTTGTGGTCGTATCGGCGCAGTTTTGACGCGAGTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34949	Mannose-6-phosphate isomerase OS=Homo sapiens OX=9606 GN=MPI PE=1 SV=2
A5A6K3	Mannose-6-phosphate isomerase OS=Pan troglodytes OX=9598 GN=MPI PE=2 SV=1
Q68FX1	Mannose-6-phosphate isomerase OS=Rattus norvegicus OX=10116 GN=Mpi PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005410 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20512 all species →	PMI_typeI_hel	Phosphomannose isomerase type I, helical insertion domain	Domain	Interproscan
PF01238 all species →	PMI_typeI_C	Phosphomannose isomerase type I C-terminal	Domain	Interproscan
PF20511 all species →	PMI_typeI_cat	Phosphomannose isomerase type I, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001250 all species →	Family	Mannose-6-phosphate isomerase, type I	Interproscan
IPR018050 all species →	Conserved_site	Phosphomannose isomerase, type I, conserved site	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR016305 all species →	Family	Mannose-6-phosphate isomerase	Interproscan
IPR046458 all species →	Domain	Phosphomannose isomerase type I, helical insertion domain	Interproscan
IPR046456 all species →	Domain	Phosphomannose isomerase type I, C-terminal domain	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR046457 all species →	Domain	Phosphomannose isomerase type I, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10309 all species →	MANNOSE-6-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004476 all species →	Molecular Function	mannose-6-phosphate isomerase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009298 all species →	Biological Process	GDP-mannose biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01809	manA, MPI; mannose-6-phosphate isomerase	EC:5.3.1.8	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →