Gene detail

Detailed information of FUN_042050-T1 in Acropora pulchra

Genomic Location: ptg000035l:10083376...10088140
NR annotation: XP_015752095.1, PREDICTED: mannose-6-phosphate isomerase-like isoform X1 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_042050-T1

TATATATATATGGGACGTCTTATGGATCTAACATGAACGCCTTACCCCCCTCTCCACGTATACAAATATTTTTATTTTTCCAATGTAGTTTGTTAAATCCTTAGTATGGCTTCTCTGGCTGGATATGATAGTGAAGTGGTTGAATTAAAATGTGCTGTTCAAAGTTATGCTTGGGGAAAGATTGGTTTAGACAGCACTGTAGCACAACTTTCACAGCACTCTCCTTCATTTGAGCTTGAAGAGGATAAACCATATGCTGAGCTTTGGATGGGGACACACATAAATGGTCCATCAAAATTGCTATGTGGAAATAAAGAGGTGTTGTTAGCTGAGTGGATTGATAAAAATACCTTTGTTTTGGGAGCTACAGTCAAGGAAGCATTTGATGGAAAGCTGCCATTTTTATTTAAAGTTTTATCAGTTAATAAAGCACTGTCAATTCAAGCTCACCCAAGTAAATCTCAAGCAAAACAACTTCACATGGAGAGACCTGATGTCTACACAGATTCCAATCACAAGCCAGAGGTGATCATTGCATTGACTACTTTTGAAAGTTTATGTGGCTTTCGCCCATTGGCTGAAATCAAGAAATATATCAAGACTATACCTGAGCTTGCTCTTATCATTGGGAAAGAAGCTGAAGATGCCATCACAAGTGGTTCAGATTCAGAGGCCTTAAAAACAGCTTTCAGTGCTCTGATGAGAAGTAAACCTGATATTGTATCCAAACATCTACACAATCTTGAAGACAGAATATTAGAGATGAAAAGGTTGGAAATGGACATTTCTTCAATCTGTGGTGACCTCCTTCTTCGATTAACCAGCCAATTCCCAGAAGATGTTGGTTGCCTTTGCATTTATTTCTTGAACTATATCACCCTGAAACCTGGCGAGGCAATGTTTCTTGGGTCAAATTTGCCACATGCCTATCTAGCAGGCGACGGCATGGAATGCATGGCCTGCAGTGATAATGTTGTTCGAGCTGGGCTGACACCAAAGTTGAAAGATGTGGATACTCTCTGTGAAATGTTGGATTATCGGTGCCGCACAAAAGAAGAGATTATTTTCTCATGCACTCAAAGCCCAAACAATCCATTTGTTACAGTTTATGATCCTCCTGTACCAGACTTCACTATTGCCAGGATACAGATTCCCTCAAGCTGTTCATCATACACATTTCAAGCACTGAATGGACCAAGTATTGCCATTATGATTTGTGGATCAGGGGGCATAAACATTTCTTCTACTAGAATAGCTTTAGGACGAGGAACTGTTGTATTTATCTCAGCAAACACAACTTTTGATTTCAATAACTGTGATGAGGTAGACTGTGAAATATATCAAGCATATTGCGTTTTATAATGGCACGTACATGACCGTGTATCCAAAAAGAATTATTAAATTATTACAATGATTGTTTCAACTACAATTATTAGCTTTCATTCCTGCACAGCAACACGATTAGCGAAAAGCGCTGCCATATTTGTAATGTTTTGGCGGTAAAAGAGGATTGAAGTCTCGCTTCAACTTGCGAAAGATGTTTAGTCTTGTTTTTTATTTGACCAACTAGTTGGATTTTACTAAAACAATTATTCCTCTCGCCCTCATAGCCTCTGAGTCAATAGCCCATTCGGCCTTCGGAATCATGGGCTTTTCATTGACTCATTGACTCATAGCCCATCCGGGCTCAAGGAATATTGTTAATTAGTAAAATCCAACTAGTGGTCTATTATCAATGCTGCATTCTGATTAGTTGAACTACAAGTAGGCTATATGTTATAGTCCACTAGTGGTAATTATTTTATATATGATACCCTATAATGTACCGTTATATAGATATATCATATATAAAGTAATTTTTACCCCACTAGTTGCGAAAACCACTTATCATATTTGTAATGTTTTGGCAGCAAAAAAGGATTAAAGTCTAGCTTTAACTAGCGAAAGATGTTTTGTCTCTATACTTTTTTGACCAACTGGTTGGATTTACTAATACAATAATTATTATTCCTCTCGCCCTTATGGCTCAATAGCCCCTTCGGTCTCATGGGCTATTGACTCAGAGCCCATTTGGTCTCGAGGAATAATTGTTACCGGTAATTATGTGGGTTACATTATTTTAGTTGCAAAAGTACTGAAAATCGTCACACAAGTCAGTTTCCTGACAGGGTAGGGAAAATTACTACTAGCTGGTCAGGCATTTATATGATTTTCCTATTGTTACTTTTGAAGGGTTATAAAAGGTGTTTTGTCATGAATAAGGTCTTGCTTGTTGCTTCTATTGTTCTTACTAATTAATGAATCTGATTACAGCAATGAATGAAAGGTCTTTTGAAACACAGGTTGAGCTTCAATTTCAGATCTGTTTAAAAGAAAGTTATGCACATTTTTTCAGTGGTGAAATTTGTTTATGCCAGTCACCATAAGCACTTTCGCCCCCGGTTTGACTTACTTTTTAAAATTTCTTTCGTTGCTTTCTCCTCCGCCAGCCATGTAAGTTTCTTGTTTTCCTTTTCTATTACTTATTTACGAGTCATGATACCATCTGTGGCATTTTAACTTATTTAATGTATCACAGTGACCCATAGTGCATTAGACGAACCAATAAAATCTTTCCTAGAGTGGTGCATCCCTTCTTCTGAACTGATGCACCATATGCAACTGGATGGTTGATCCTGACCTTTCATCCCAAAGGAAAGAATCCTTGATAATTCGCAAGTTGTGATTGGTTGACGTTGTGGTCGTATCGGCGCAGTTTTGACGCGAGTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34949	Mannose-6-phosphate isomerase OS=Homo sapiens OX=9606 GN=MPI PE=1 SV=2
A5A6K3	Mannose-6-phosphate isomerase OS=Pan troglodytes OX=9598 GN=MPI PE=2 SV=1
Q68FX1	Mannose-6-phosphate isomerase OS=Rattus norvegicus OX=10116 GN=Mpi PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20512 all species →	PMI_typeI_hel	Phosphomannose isomerase type I, helical insertion domain	Domain	Interproscan
PF01238 all species →	PMI_typeI_C	Phosphomannose isomerase type I C-terminal	Domain	Interproscan
PF20511 all species →	PMI_typeI_cat	Phosphomannose isomerase type I, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001250 all species →	Family	Mannose-6-phosphate isomerase, type I	Interproscan
IPR018050 all species →	Conserved_site	Phosphomannose isomerase, type I, conserved site	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR016305 all species →	Family	Mannose-6-phosphate isomerase	Interproscan
IPR046458 all species →	Domain	Phosphomannose isomerase type I, helical insertion domain	Interproscan
IPR046456 all species →	Domain	Phosphomannose isomerase type I, C-terminal domain	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR046457 all species →	Domain	Phosphomannose isomerase type I, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10309 all species →	MANNOSE-6-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004476 all species →	Molecular Function	mannose-6-phosphate isomerase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009298 all species →	Biological Process	GDP-mannose biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01809	manA, MPI; mannose-6-phosphate isomerase	EC:5.3.1.8	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.