Detailed information of FUN_042398-T1 in Siderastrea siderea

Genomic Location: contig_54:4916899...4930749
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13506
all species →		Glyco_transf_21Glycosyl transferase family 21DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025993
all species →		FamilyCeramide glucosyltransferaseInterproscan
IPR029044
all species →		Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12726
all species →		CERAMIDE GLUCOSYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006679
all species →		Biological Processglucosylceramide biosynthetic processInterproscan
GO:0008120
all species →		Molecular Functionceramide glucosyltransferase activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016757
all species →		Molecular Functionglycosyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00720UGCG; ceramide glucosyltransferaseEC:2.4.1.80
Glycosyltransferasesko01003deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_042398-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
40.6Max TPM
1.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 2.03 40.55
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 1 0.80 15.27
Whole organism 4 4 4.88 6.04
unannotated 1 1 2.37 2.37
live coral tissue/skeleton 1 1 3.90 3.90

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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