Detailed information of FUN_042424-T1 in Siderastrea siderea

Genomic Location: contig_54:5219706...5230265
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15019
all species →		C9orf72-likeC9orf72-like protein familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027819
all species →		FamilyGuanine nucleotide exchange factor C9orf72Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31855
all species →		GUANINE NUCLEOTIDE EXCHANGE C9ORF72Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005768
all species →		Cellular ComponentendosomeInterproscan
GO:0005776
all species →		Cellular ComponentautophagosomeInterproscan
GO:0006897
all species →		Biological ProcessendocytosisInterproscan
GO:0006914
all species →		Biological ProcessautophagyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_042424-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_042424-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
15TPM > 0
7Conditions
102.5Max TPM
9.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 5.02 56.89
holobiont · low.pH Control.temp 20 1 1.92 38.40
holobiont · control.pH_high.temp 20 4 14.91 102.47
holobiont · control.pH Control.temp 19 2 5.56 58.76
Whole organism 4 4 41.75 69.45
unannotated 1 1 40.40 40.40
live coral tissue/skeleton 1 1 61.16 61.16

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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