Gene detail

Detailed information of FUN_042563-T1 in Siderastrea siderea

Genomic Location: contig_55:1811577...1877267
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_042563-T1

ATGCTCCTGCTCCATGCACGTGAATGTCAGTGGCAGGAGCAACAAGCTCAAAATGGTGCTGCAAAGCCCTGCAACGTACTCCATTGTCAAACtatgaaaaatgttttgaaCCACATGGCTACATGTACTGCAGGAAAAACATGTCAAGTTGCTCATTGTGCTTCATCGAATGCAATCATTTCACACTGGAATAACTGTCTCAGGGAGGACTGTGTAGTCTGTCTTCCTGTCAGGCATACGCTTGATAGCAGAACTGGAGAGAACAAGTCATTTGGTGAAACATCTGTAGCGGCCTCTAACACGACTGCAAACACCAGTCGTGGTCCAAAAGACTGGCATCAGTGTGTGACACCAGATTTCAGGAATCATCTTGTAATGAACATGGTTACAGCTATTTGTCCAGCTCCACTTTTTAATCCTGCTGTCCTCAGAGATCCACACATGGGcaattttgtttcatatttacGCAAATTTGAAGGAGATATGTACGAGAAAGCAAACAGTACGGTAGAGTATTTTCAGCTATTAACTGAACAAGTACACAGATATCAACGCAAACAGCAAGAGATACGTCAAAGGGAACTACGACCTAAGCTGGGAGAGAATAAAGATCCAGCTTTATCACCAATTCCTCCGTATATTCTTGCCAGAGGAGAACAAGCCAAAGTAGTTTACCTACGAGCTCTGGAAACTGGGAAGACAACTGACAAACGCGTTAGAATTTTGTTGGTTGGTCAAGACCGTGTCGGAAAGACTAGTGTTGGGCGGTCACTAAAAGGTGAGACATTCAAAGCAGATGAGTCAAGCACAGAGGGAGTGCAAATGGACATAGCTTTGAAAAACGTTGATGAAAAACCTTGGAAGAATTCTACTAAAGAACAGGAAATAACtgcatttgaagaaaaatgcgcTCGGTATATCAGTGATTTGTTGACTGAATCTCCAGAAAGTGAGGTGCTCCCCGGATTGGAGGAAAAAGTGGCAGAACAGGTGGATGAATTCCCTGCTGATGACGGACTTAATGCTGTCTCAAGTAATGAAGTTCAAGATTGCGTGGAAGTTACAAAGGATGCAGAGCTTGAGAAGCGGGAAATCGTCATACCAGAAAAAATTGCTGCACTTGCCGTTGAAAACCTGTCAAAGGATAAAGATGGTGgtaaaaataaagcaatttgGCCAGTTATCACCGATTTTGCTGGTCAAGCTATTTATCGTGCCATTCATCCCATCTTCGTATCAAGTGAAGCAATTTACGTTCTTGTGTTTGATCTCACCAAGGATCTTTCTGCCACAGCCTATTGTCATGTAAGAGAACCTGGTCGTGGTGAGGTTAGCATTCAAGCCCCAGACAGAAGTGACACAAACCTAGACCACGTTATCAGATGGCTGGACTTGGTGCATTCATTTAAGCATTCTGACAACGGCCAATTACCGCCTGTTTTTCTCGTGGGAACACATGCTGACCTTGTACAAGGTAACCCCAGTGTCAAGATGGATACTCTGGTGGAAATCATATGCGATACTACGAAAGTCTTCAGTGATCATATTGTAGGAACCTTCACAGTAGACAACACCCGTGCTGGTCGGCAGCAAGAAGATCCTCAGATCGTCAATTTGCGGGAAGAAATACTAAAGTTGGGTGATGGCATGCCACATACAAAAATGGAAGTTCCTTTGAAGTGGCTTCAAGTGGAAAACAAGGTTTATGATCTAGCCAGCAGGGGAGAAAATTATATCACAAGGCAAGACTTTAAAAGTAACATCTACGACGACATTTGCCCATCTGAAGCTGAGGGTGACTTTGAAGTACTTCTGCTATTTTTGCACGATCGTGGCACAGTGGTTTATTACGGCTGTGGAAATGATCCAAACAGTTTAGTTGTATTGAATCCACGCTGGCTGATTGATGTTCTGTGTCAGATAATAactgttgaaaaacaacaaaaagaaacaattcgCATTCGCAGCCTTCGAAAAAAACTTGGAGAGTACGGCATTCTTGACGCAGAACTGTTGGACCATGCTTGCGATAGCCTGGGAATTATTAACATCAAGGAGTCCTTACTTACCATCATGAAAAGATTCAACCTTCTCTGCGAATTCAACTGTAAGGACGGTAACTCAGTGTATCTAGTGCCTTGTATGTTGACATCCGAACCAAAGGACGGACTTTCTGAAAGCCAACAACTAGCACCAGTGTTTGTCACATTTGACACTCAGTATGTTCCAAGTGGACTATTTTCAAGACTCATTGTGCTCTTTGTGGAATTTTCGAAAAGAAGAGTAAACTGCGACCAGCCCAAACTACATGCCAATTTTGCTCGATTCTTTGTCGGAGATGTTACTGGTGTTGAATTTGTTTGCTACAAACGTGTCATCAAGGTGCACATTTGGGATCACGTCAACTCCAATTCAAATCCAGTGGAGAAAGAACATGATGTTTGTTTGGAGTTGTTTAGCTTTTTGAAGAGTGGCTTAGAAAAGCTTCAAGAAGAGTGTCACTGGTTGCGTGCAGTTACCTGGGATCTCTGTGCTCGATGCAACTTGTGTCCTCCCCAGTGTGTTACTAAGACTGGTGAATGTGTTTGGCATGGAAAAAAAGAATGTCTTCATGATGACTGTGCCCACTATGTTTCTTTGACAAGAAAGCCAGTCCGTTGCGCTCGCACTAAAGGTCGCAACTGCTGCCCGCCCAAGACTTGGAGTCAGGCCTTGGAGGAACTCATGCTTCATGGACAGCCTGGTGGTGATCATGAGTTGCGAGCACCTGCTGATTCCAAGAGAGAATCGCCGTGTTCTACTCCTCAAGATGATCGCTACCAAACCGAACCCATGACTACGGCTCATACAATCAAAGAAGGCAGTCCATCTCTTGAAGAACTGGAGGATCTAGCAGGGTGCATTATCGAAGCTTGGAGGAAGCTAGGGCGTCGGCTAAAATTTGACGAGCCACAGCTAACAGGTTTTCACAAAGAAAATGAGGAATACTCTGAGAAGGCGTACAAAATGTTGTTGGCATGGAAACAAAGAAACGCTTCAGCTGCGACTTACCAAGTTCTACATGACGCGCTGTGTCATGACTTGGTTTGCCCAATCAATGATCGGCTTGCTGGACTCGGGAAGGTGACTAAAATGTTAGGTTTCCGTTCtgatgataatggtgatgacGGGCGTTCCCAAGGTATCCTTTGTTGTCTGAGAATGATACAGGGAGCCTTGGGTAAAGACAGCAGAATCTCGAACTGA

Transcript

FUN_042563-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02172 all species →	KIX	KIX domain	Domain	Interproscan
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003101 all species →	Domain	Coactivator CBP, KIX domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036529 all species →	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_042563-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.