Gene detail

Detailed information of FUN_042656-T1 in Siderastrea siderea

Genomic Location: contig_55:3146747...3151625
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_042656-T1

GTggcaaacaaaatggcggaagaAGATCAAGTTGGTGCAAGCCTGCGATGACTTTTTCTCCCAGTAAGCAACATTTTGTGACTCTAAATGGCGACTCACTCCCATCTAGGTAGCAGCACTCCATCTGAACCTACAGAAAAAATTGGAAGTACTGGCAAACGCGATGTTCCAGGAACCCATGTCAAAACTGAATCGCCGAGATCTGCTAGGAAGCGAGAAGGAGAGGAAGGTTTCATGGCTTCAGACCTGTTTTGCCATGTAATGGGGACAATGATTAACAAACAGGATGTCCATTCAATACTGGAAAAACAGGCAGAGACGCTGACGAAATTTGAAAAGACTAATGCAAAATTTGGAAGATTCAATGATTTGTCTGCTTCCCGATATTTACACCTAAATCAACAACTGAAAAATCACACTAAGATGTTGTTGGACATGAAAAAAGACTTGGATTCTATCTTTAGAAGAATAAGaaCTTTAAAGACTAAGCTGACAAAGCAGTATGGACCTGCATTTAATGCCACCTCTGCTGGTATACAAAAACTAGAAGAGGAGCTTGGAGCAAGCGTTGAAAATGAAGGTACAGCTTCTTTAAGTACATTGACTGAAAGCAAAGAATTTAACTCTGACAGCCAGTCCACAAATCAAGGAATAAAGAATGCAGAGCAAGAGGTTAAGCAGAAAAATACTGGAGAAGTTGTCAGGCAAGGCAGTGATTTGTCTGTTGAAAACAGAACTGCTCAAACCACAGAGATGAAAATGCAAGACAGTGACAATGGTTCTCTTACCAGTGTATCAAGTGTCCACAGCATGAGTAGGACAATGGAAACAGAGGACATTAGTATGGCAGTAAGCGTAGTCAACTTGGAACGGACGGTAGATataaataaaatcaacattaGTGAAGACAATTCTCAGACCTCTCAGATAGTGGACATAAGGCAAGTTGGTGATGTGACAGGGACAGTTGATAATGGTGACACATCTGGGACTGTGGACACTTGTGGTATAACTGAGGCAGTAGACATAAGTGACAAGAGTCTGGCAGAGGACAGTGGTTGCACAACTCAGGCAGTAGTCACTGGTGATATAACTCATACAGCACACACAAGTAACTTGAAGCAGACAATAGACACTGGTGAAGACTGCCTTGAACAGTGCTCTGCAGAAGAGAATAGAACTGGTGCTATGACAGTGGGTGTAGAAAATACCAGCCTATCtcaaatttgaaacaaaaacaacagagtTAGAATTGAGCTTGCTGGAGGCTAGTTTATGAGGCTATGGAGAGCCTTACAGAAAAATACCAAGTTTCTAGCTAATCTCTCATAATTTCTCTGTTATACCATTAAACTAAGGTAACATTTAGTGCTAAAAGGCATTCTTCATATGAGGGGTTGCCAATCCTAGATTTTAAGATCCATCTCGTGCTCCATCGTTGTACCTGTTAAATTTTGGCCTTAATTTTGGTAACACAGTAGGGAGAACACATCCACAAAGCATAACAAAGCTGTGACTCAACCAGAGATGAATTCAAGGACCACCATACTTTCGGGTCTCACAAGAAGGGACAAGTTCTCTTTGGTAAATGTAAATGCTTATTAGCTTTAGCTAATGTGGGTGTGTGTGGGAATCCCAAGAGAGGCCACTTGTGACAAAGATCCCACGATCCAATTCCCTTTTTATGTGGAGCAGCTTATCTGCTTAGGTAGTAAATGtaagaaatttaaatttaaaacaattaaaaaacaaatgcaaaagaGCTAGAATTGAGCCAATTGGAGGCTATAATAGTCCTGACAATGATGCCATAAGGATCTGCCTTGAAAATTACAACTGAATTACAGACAAAATACTACTTCCCAAAGTATAAACAATCAATCTGCTAATTTCCTAATCAATGCTTTGAGATCATGGACAGGTCATGATTGGCAAATCATAGGCAGCAAATGACGTTTCAACACCTCGTCTCTGCCCACAGctttaaaaaagcttttttgTGTGTGGCATTATTGATGTCTTGTAAACCACGCCATTAAAGTTGTGGTCACCATTTTTTAGTAGTCCAAAGTTTCAGTTGTCTCCTAGCCCTACCCCTTTCCCTTGTGGCGAGGAGTAGGGCAAGAAAACGGCTGTCATACTTGGGACTGAACACAATGCAGACAGAGACACAGAAGGGGTAATCAGAAAAcctttgctttttttaaatGATAAATAATATTAATAGAAGGGGTAAAGCCCGGAAAGAAAATTATTAACCTGCTTGTCGGTAAAATGCTGACTCGCAGTTAAGGTCAGGGTGTtctcatttctttgtttgttttgtttttgttttgttgttgttgttgctttttttcacTTCCGGTGTGTCTTTTTTTCctaactttgaaacaaaaaacaacaacaacaacacgaaacaataacaacaaataaaaaactaGACATCCCTACTCTGACTCCGAACAAAACTCTGAGTCGGTGTGTTACCTTAACCCCCTGTTTATCAATCCTTTGTTAATTCTCATCCATATGCTtgattatttattgattttgtaaAGAGAAATAACATGATGATCACGTTATAAGATTTTTTCCTCTAAATTATTAAAAGTAGCCATTAATCcc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10241 all species →	KxDL	Uncharacterized conserved protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039843 all species →	Family	KxDL motif-containing protein 1-like	Interproscan
IPR019371 all species →	Domain	KxDL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13511 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032418 all species →	Biological Process	lysosome localization	Interproscan
GO:0099078 all species →	Cellular Component	BORC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20818	KXD1, BORCS4; KxDL motif-containing protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.