Gene detail

Detailed information of FUN_042884-T1 in Acropora pulchra

Genomic Location: ptg000047l:1298888...1300389
NR annotation: XP_044174622.1, E3 ubiquitin-protein ligase rnf213-alpha-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q555	E3 ubiquitin-protein ligase RNF213 OS=Mus musculus OX=10090 GN=Rnf213 PE=1 SV=3
A0A0R4I9Y1	E3 ubiquitin-protein ligase rnf213-beta OS=Danio rerio OX=7955 GN=rnf213b PE=3 SV=1
A0A0R4IBK5	E3 ubiquitin-protein ligase rnf213-alpha OS=Danio rerio OX=7955 GN=rnf213a PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000236 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07728 all species →	AAA_5	AAA domain (dynein-related subfamily)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011704 all species →	Domain	ATPase, dynein-related, AAA domain	Interproscan
IPR031248 all species →	Family	E3 ubiquitin-protein ligase RNF213	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22605 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00760	hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase	EC:2.4.2.8	Drug metabolism - other enzymes	ko00983	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.