Detailed information of FUN_043092-T1 in Acropora pulchra

Genomic Location: ptg000047l:4006282...4035834
NR annotation: XP_044174996.1, laminin subunit gamma-1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q61789Laminin subunit alpha-3 OS=Mus musculus OX=10090 GN=Lama3 PE=1 SV=4
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
Q16787Laminin subunit alpha-3 OS=Homo sapiens OX=9606 GN=LAMA3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002658 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan
PF00052
all species →		Laminin_BLaminin B (Domain IV)DomainInterproscan
PF21199
all species →		LAMININ_IV_BLaminin IV type B domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR000034
all species →		DomainLaminin IVInterproscan
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR013015
all species →		DomainLaminin IV type BInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005604
all species →		Cellular Componentbasement membraneInterproscan
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan
GO:0034446
all species →		Biological Processsubstrate adhesion-dependent cell spreadingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_043092-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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