Gene detail

Detailed information of FUN_043175-T1 in Acropora pulchra

Genomic Location: ptg000047l:5017292...5042966
NR annotation: XP_044175762.1, Na(+)/H(+) exchanger beta-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_043175-T1

ATGTCTCTTAAAAGTCGCTCAGCCTTGTTTTTAGTTGCGGTCGTCTTAATTTGCCGTATCACCATCGGTGCCAGTGCGAATGAATCACATTCACAGCAGTCGGAGAATAATTCTAACCACGAAGATCCACCCCCGCTCAAAGTTGCTAAATTTGATTTTGAGCGTGTCTCAGGGCCTTTGATCATCATTGTGTGGATTTTAATCGCAAGCCTTGCAAAATTAGGTTTTCATTTATCTCACAAGTTGTCTTCAGTAGTACCGGAATCATGTCTTGTAATTCTACTGGGAATAGTTATTGGTGGAATCATGAAGGGAATTGGGGCAGAAATTCCAAACTTCACATCTGACACTTTCTTTCTCTTTATGTTACCACCTATTGTTCTTGAAGCTGGCTACTTTCTCCAAGATCGAGCATTTTTTGACAACATTGGAACAATATTGCTCTATGCTGTTGTAGGAACAATCTTCAATACTTTCACTGTGGGGCTCTCTCTGTTTGGAATAAGTGGCAGGCTTGGAATCAATATACCTGTTATGCATGCCTTGACATTTGCTTCACTCATTGCTGCTGTAGACCCAGTAGCTGTGCTTGCTGTGTTTGAAGAGATCCATGTGAATGTGATGCTGTATATCTTAGTGTTTGGGGAATCGCTCTTAAATGACGCAGTTACTGTGGTGTTGTACCATCTGTTTGAAAGTTTAGCCCAGTTTGATGAAATTACTTATGCAGAGGTTCTTAAAGGCTTGGCATCATTTTTCGTGGTCAGTCTTGGAGGCACAAGCATGGGTCTCCTCTGGGGCATAACCACAGCATTTATCACAAAGTTCACTGACCATGTTAGGGTTATTGAACCTATCTTTGTTTTTGTCATGAGTTATCTCTCGTATCTGACTGCAGAATTGTTCCACTTTTCCGGAATAATGAGCATTGTCACTTGTGCAATTATTATGAAGCCCTACGTGGAGCTCAACATTTCAAGAAAATCTCACACAACAATAAAATATTTCATGAAGATGATGAGTTCCAGCAGTGAAACTCTCATCTTCATGTTTCTTGGTGTTCGTGTTGTTACTGAAAAGCATAATTGGAACTCGGGCTTTGTGTTCGTTACGTTGATTTTTATTTTAGTCTTTCGCGCCTTAGGGGTAGTTCTTCTGACGTCTCTAGCCAATTATGGACGGCTGAACAAGCTCAGTGCTGTAGATCAGTTTATCATGAGCTATGGTGGAATCCGAGGAGCGGTGTCTTTTTCTTTGGCTATCTTACTTACCCAAGAACATTTCCCCCTCAGAGAGATGTTTGTGACGACTACTATTGTCATTGTTCTTTTTACAGTTTTCTTCCAGGGAATGACAATCAAGCCTCTGGTTCGAATTCTACACGTCAAACTCAGAGGCAAGGAAGAGATGAATATGTATGCAGAACTCAATGACAAGCTTTTAGATCATCTTGTGGCAGGAATCGAAGAAATAAGTGGTCATCGGGGGCACGGATATTACAAGGAAATGCTGGAATATATTCACAATAATTACCTGAGAAGATGGTTAATACGGGACGTTAATAGCTTGGTACACGATGAAGATATTTTACTGGCGTACAGAAGATTAGCTTACAAAGATGCGCTGACTCGGCTGGAAAGGGAGGGCAGTGGCGCAGCTTTATTCAAAAACTCCACAGAACCTGTATCCATCCAGCTACTTTGCAGAGGAGCTTTTGAGGCCTCCGCCATCACATCGACCGAACCCCCAGAGGCGGATGACGTAACCAAGCCAATGTTAAGAGATGGAACTCGTGATGTCCGTGTACCTGATGCTGTTCAAAAGGACTGGAGAGCAGAAGGAGTGTTGGATGACGATCTTGAAATACACGACCATTCCACAAGAAACTTAGACGATCTTCTTTCAAGAAACAGGGGAAGCTTTAGACACAGGAAAATGTTCAGAAATAACATAATCGACGACGATGAGGAATTCTTTCGAGACAGACGTTACCTTTTGCCGATGAAACCGAGGGAAACTGCGTATCAAGATCAGATTTTGGTGAACTCTAAGCCTGTTCATACCCATCACAGGCGCAAACACAAGCGCCACGGCCACAAACATCACAAGCGTCACAACCACTCGCTCAAGAAAAAGCTGTCCGCCATATTTGAAGAAACAGACGGGGGTGACCAGAATAGGAAGTCTTCTCCGACCCACGACAATACGGACAGAGACATTCCCAGCAGTGAAGACGAAGAGTGCGGTATAACATTTAGCGCTGGAACGCCGGGTCGAGAACCCTCCCTCGATGACAATGATGGACGCGATAACCCGAGGAAATTTACAACTGGCGGGCAATCGTCAAGTGACACATCATCCGATGAAGAAGACGTCCAACCAAACAAAGGAAAACCGGCGAGGCCGAATGAAAGTGTTCCCTTGGACTCTGTTGTTGTGAATATTGAAGACAATATTGAGGATGGTGAAAAAGAAGAGGAGACCAGAATGTGA

Transcript

FUN_043175-T1

CTCTTTTTATGATGGATAAATTGCAAGTCACTCGTCCGCATAACAGATAAATAATGCCTTGATATAGTTTAGAGGGCAAACCAAGATGTCTCTTAAAAGTCGCTCAGCCTTGTTTTTAGTTGCGGTCGTCTTAATTTGCCGTATCACCATCGGTGCCAGTGCGAATGAATCACATTCACAGCAGTCGGAGAATAATTCTAACCACGAAGATCCACCCCCGCTCAAAGTTGCTAAATTTGATTTTGAGCGTGTCTCAGGGCCTTTGATCATCATTGTGTGGATTTTAATCGCAAGCCTTGCAAAATTAGGTTTTCATTTATCTCACAAGTTGTCTTCAGTAGTACCGGAATCATGTCTTGTAATTCTACTGGGAATAGTTATTGGTGGAATCATGAAGGGAATTGGGGCAGAAATTCCAAACTTCACATCTGACACTTTCTTTCTCTTTATGTTACCACCTATTGTTCTTGAAGCTGGCTACTTTCTCCAAGATCGAGCATTTTTTGACAACATTGGAACAATATTGCTCTATGCTGTTGTAGGAACAATCTTCAATACTTTCACTGTGGGGCTCTCTCTGTTTGGAATAAGTGGCAGGCTTGGAATCAATATACCTGTTATGCATGCCTTGACATTTGCTTCACTCATTGCTGCTGTAGACCCAGTAGCTGTGCTTGCTGTGTTTGAAGAGATCCATGTGAATGTGATGCTGTATATCTTAGTGTTTGGGGAATCGCTCTTAAATGACGCAGTTACTGTGGTGTTGTACCATCTGTTTGAAAGTTTAGCCCAGTTTGATGAAATTACTTATGCAGAGGTTCTTAAAGGCTTGGCATCATTTTTCGTGGTCAGTCTTGGAGGCACAAGCATGGGTCTCCTCTGGGGCATAACCACAGCATTTATCACAAAGTTCACTGACCATGTTAGGGTTATTGAACCTATCTTTGTTTTTGTCATGAGTTATCTCTCGTATCTGACTGCAGAATTGTTCCACTTTTCCGGAATAATGAGCATTGTCACTTGTGCAATTATTATGAAGCCCTACGTGGAGCTCAACATTTCAAGAAAATCTCACACAACAATAAAATATTTCATGAAGATGATGAGTTCCAGCAGTGAAACTCTCATCTTCATGTTTCTTGGTGTTCGTGTTGTTACTGAAAAGCATAATTGGAACTCGGGCTTTGTGTTCGTTACGTTGATTTTTATTTTAGTCTTTCGCGCCTTAGGGGTAGTTCTTCTGACGTCTCTAGCCAATTATGGACGGCTGAACAAGCTCAGTGCTGTAGATCAGTTTATCATGAGCTATGGTGGAATCCGAGGAGCGGTGTCTTTTTCTTTGGCTATCTTACTTACCCAAGAACATTTCCCCCTCAGAGAGATGTTTGTGACGACTACTATTGTCATTGTTCTTTTTACAGTTTTCTTCCAGGGAATGACAATCAAGCCTCTGGTTCGAATTCTACACGTCAAACTCAGAGGCAAGGAAGAGATGAATATGTATGCAGAACTCAATGACAAGCTTTTAGATCATCTTGTGGCAGGAATCGAAGAAATAAGTGGTCATCGGGGGCACGGATATTACAAGGAAATGCTGGAATATATTCACAATAATTACCTGAGAAGATGGTTAATACGGGACGTTAATAGCTTGGTACACGATGAAGATATTTTACTGGCGTACAGAAGATTAGCTTACAAAGATGCGCTGACTCGGCTGGAAAGGGAGGGCAGTGGCGCAGCTTTATTCAAAAACTCCACAGAACCTGTATCCATCCAGCTACTTTGCAGAGGAGCTTTTGAGGCCTCCGCCATCACATCGACCGAACCCCCAGAGGCGGATGACGTAACCAAGCCAATGTTAAGAGATGGAACTCGTGATGTCCGTGTACCTGATGCTGTTCAAAAGGACTGGAGAGCAGAAGGAGTGTTGGATGACGATCTTGAAATACACGACCATTCCACAAGAAACTTAGACGATCTTCTTTCAAGAAACAGGGGAAGCTTTAGACACAGGAAAATGTTCAGAAATAACATAATCGACGACGATGAGGAATTCTTTCGAGACAGACGTTACCTTTTGCCGATGAAACCGAGGGAAACTGCGTATCAAGATCAGATTTTGGTGAACTCTAAGCCTGTTCATACCCATCACAGGCGCAAACACAAGCGCCACGGCCACAAACATCACAAGCGTCACAACCACTCGCTCAAGAAAAAGCTGTCCGCCATATTTGAAGAAACAGACGGGGGTGACCAGAATAGGAAGTCTTCTCCGACCCACGACAATACGGACAGAGACATTCCCAGCAGTGAAGACGAAGAGTGCGGTATAACATTTAGCGCTGGAACGCCGGGTCGAGAACCCTCCCTCGATGACAATGATGGACGCGATAACCCGAGGAAATTTACAACTGGCGGGCAATCGTCAAGTGACACATCATCCGATGAAGAAGACGTCCAACCAAACAAAGGAAAACCGGCGAGGCCGAATGAAAGTGTTCCCTTGGACTCTGTTGTTGTGAATATTGAAGACAATATTGAGGATGGTGAAAAAGAAGAGGAGACCAGAATGTGATTGATGTCACGACCAACGTGAAGAGTAGAATTTTATTTTAGTAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61165	Sodium/hydrogen exchanger 1 OS=Mus musculus OX=10090 GN=Slc9a1 PE=1 SV=1
Q28036	Sodium/hydrogen exchanger 1 OS=Bos taurus OX=9913 GN=SLC9A1 PE=2 SV=2
P23791	Sodium/hydrogen exchanger 1 OS=Oryctolagus cuniculus OX=9986 GN=SLC9A1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003187 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00999 all species →	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006153 all species →	Domain	Cation/H+ exchanger	Interproscan
IPR018422 all species →	Family	Cation/H+ exchanger, CPA1 family	Interproscan
IPR004709 all species →	Family	Na+/H+ exchanger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10110 all species →	SODIUM/HYDROGEN EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015385 all species →	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0015386 all species →	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719 all species →	Biological Process	sodium ion import across plasma membrane	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0006885 all species →	Biological Process	regulation of pH	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12040	SLC9A3, NHE3; solute carrier family 9 (sodium/hydrogen exchanger), member 3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.