Gene detail

Detailed information of FUN_043530-T1 in Acropora pulchra

Genomic Location: ptg000047l:9600947...9604727
NR annotation: XP_029180324.1, ribosomal RNA small subunit methyltransferase NEP1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35130	Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus OX=10090 GN=Emg1 PE=1 SV=1
Q92979	Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens OX=9606 GN=EMG1 PE=1 SV=4
Q9W4J5	Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster OX=7227 GN=CG3527 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006796 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03587 all species →	EMG1	EMG1/NEP1 methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029026 all species →	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR005304 all species →	Family	Ribosomal biogenesis, methyltransferase, EMG1/NEP1	Interproscan
IPR029028 all species →	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12636 all species →	NEP1/MRA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070037 all species →	Molecular Function	rRNA (pseudouridine) methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14568	EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1	EC:2.1.1.260	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.