Gene detail

Detailed information of FUN_043532-T1 in Acropora pulchra

Genomic Location: ptg000047l:9610316...9624994
NR annotation: XP_029180274.1, far upstream element-binding protein 2-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_043532-T1

ATGGCGGCTTCCACGAAGAGGGGCTTTGCGTTGTGCAAGAATATATTTGCGTTCAAGGGGTTGGGTTATTCGACTAGTTCCCAAGCAGAAAAAAAATATGGCTTAGAATTTCCCCGGTACGCTAAGAAAAACTATAAATATATTCTCGACGAGGGATTAGCTTCCAGGATCGCGTATAGTCTTGGACATTTACAGAATTCTGTGACTGTGATCGAGACAAATCCTGGCCCAGGTGTTCTGACGAGAGCGCTGTTTGAAGCTGGGGCTACTCATATTGTTGGGCTTGAACCTGAGAGAAGGTTTCATTCAGCTTTGTTGGATCTCAAGCAACAAGTTAGGCCGCCAAGGCGATTTGATTTACTTCATGGCGATTTTAGCAAAATTGATCCACACGATGGATCAGTTGGCACAGGGGCGCACTGTACACCCCCTGCTATATCTTCCCGTGATGTCTTAGCTTATGTGTTGCCTCATTCGTGGCAATCTGATCGGTTAGCGGCAAGATTTCTCGGCGTTGAAGCTGCTTCAAAGCCCTCGATTCTTCCTAGAGTATTGCTTTCTCATTTGAGTCAAATGGCTGCCAGAAGAGGCATCTTCCAGAAAGGGAGATGTGAACTTGTTTTCTTCTACGCAGAGGAACGATCGCAGAAAATTACTGCTCAATTTGGGAGTAAACATTTTGGTAGATTATCTCTCATGGTGTCATTATTCTGTGACATTAGAGTTTTACTGCGGGAGCCTTCTACACTATTTTATCCAGTATGCAGCGAAGAAAAGGAAAAATGCCTAAACTTGGTCAGCATCATTCCAAAGAAAACTCCTCTTGTCAGTGTCTCCAGTCAAAATATGCATTATCTTAACCACTTTATAAGACTCTTACTTGTTAGGCCTCAACGCAGGGTTGTTGATGCTGTTGAAAGCGTCTTGTTTTTTAATGTGACTGGGGATCCTGTGGCGCCTCGTAAGAAAAAGCCCACCATCCTCTGCGTTAGATCAATTCTCTCTTCTTCACGTGCAAGAATGGCTGACGCTGTGGCTTTCAACTCTGTTCCACCACCTTCGGGTGCCTCAGTTGACCCTAGTTCAGCCTTTGCTGACGCCTTAAAAAGAGCAAAAGAGATCGCGGCCAGGATGGGATCAAGTAGCGCTGCCGCCGCCGCGGCCGAGGCTTCACATTTGGCTGAGCAAGATCTTAGCAGGAAAAGACCCTTCGAAGTTGACGGCGGAGATGCCGAAATTGCGGCAAAAAGACAAGCTACAGAGGCTAGTGTCGATGGCAAAGATCCCAAATCAATAGCTCTGCAAGTTGCAGCAAGCCTTGCTCAAAGAGCTGGTCTTGGATCTATGGTGTCAGAGGATGTCAGAATCCCAAACCGATTTGTAGGATTAATTATTGGGCGTGGTGGGGAACAGATCAATAAACTTCAGTCAGAAACAGGAGCAAAAATACAAGTTGCACCAGACCCTCCACCTGGTCAAATGCTGCCACCAGATCGAAATGTATCCATAAATGGATCAAGAGAAGCTGTAGATAAGGCCAAGAATCTTTTGAACAGAATATGTGATGAAGGCAAAATTCCTGAATCATTGATGACCATGCCAGTTATTGCACCTGGTGAACAAGTTATTGAGCTTATGATACCAGCCAGTAAGGTTGGACTGATCATAGGAAAGGGTGGTGAAACCATTAAAACTCTTCAGGAAAGGGCCCAGTGTCGTATGGTCATGATCCAAGATGGACAATTTCTGAATGCTCCTGAGAAACCTCTGCGTATAATGGGGGATCCAATGAGAGCACAAAGGGGAAAGGACCTTGTCCAAGATCTTTTGACTGAGAAAGAGCTAGAGGTCAGTGGTCAAGCTGGGGAGAGGAATTGGAAGCAAAATATGCCAGGAATGGACTTTAAAGGAAACAGACATGATCAGAACAGAATTCAACCTGGAATGCAGCAGTTAGAGGTTCCTGTTCCACGCGATATTGTAGGTTTTGTCATTGGTAAGAATGGTGAAACCATCAAGAGAATTCAAGCAGATACAGGAGCAAGAGTTCAATTTAATATGAAGGATAACTCAAATGCTCCTGAGCGGATGGCATCTGTCCAAGGAACTCCAGAACAAGTTCAACATGTTCAAAAACTCATTCAAGAAATAATAGAACAGTCCCGACAACGAGGAGGTCCTCCTCCAAGAGGTCCACCAGCAAACATGCCTGGAATAAACTCTGTTGAGTACCCAGTGCCTGGCAACAAATGTGGATTAGTAATTGGCAAAGGAGGAGAAACCATTAGAAATATCATCAAGGCTTCTGGTGCACATGTAGAATTGAACAGGAACATTCCAGAAAGCTCGCCAACAAAATGTTTCATGATAAGAGGCACAGATCAGCAGATTCAACATGCGCAGCAACTTATCAGGGAGAAGATAGAAGGAGAGAGAGGAGGCAGAGGTGATTTCAACCAGGGTGGTGGACAAAACTGGAATCAACAAGGCTGGAACCAACAACAGCAGCAGCAGCAACAACAGCAACCACAGCAAGGCAATTGGCAACAACAATATGGGCAGTTTGGACAGCAACAGCAACCCCAGCAATACGGACAGCAGCAGCAGCAGCAACCCCAGCAGTACGGACAACAACAACAATTTGGTGGACAGCAACCTCCACAGCAACAGGTAAGCGCTGTTGATCTCTCCATGTATGGCTGCCATTGTGATACAAGGGTCATGTTTTATGAAAGTAAAACCTCTTTGGTTATTTTTTGTGACTGTAAGGTTTTAGGGCTAAGTTAA

Transcript

FUN_043532-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AE4	Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=3
Q32PX7	Far upstream element-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Fubp1 PE=1 SV=1
Q91WJ8	Far upstream element-binding protein 1 OS=Mus musculus OX=10090 GN=Fubp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF00398 all species →	RrnaAD	Ribosomal RNA adenine dimethylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR001737 all species →	Family	Ribosomal RNA adenine methyltransferase KsgA/Erm	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR020598 all species →	Domain	Ribosomal RNA adenine methylase transferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288 all species →	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan
GO:0000179 all species →	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_043532-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.