Gene detail

Detailed information of FUN_043553-T1 in Acropora pulchra

Genomic Location: ptg000047l:9835734...9853526
NR annotation: XP_029179780.1, serine/threonine-protein kinase Nek6-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_043553-T1

ATGGAGGGGTACAAGCTCCATCAGCGACTTGGCAAAGGCGCTCAAGGGTCTGTGTTTCTGGCTGAAAACAAACAAGACAAGAAAATGTACGTTTTGAAAAAGGTTGAATGTAATGATGAATGTGAAGCAAATAAAGCATTCAAAGAGGCTGTGGCATTACAAGAACTTCAGCATTCAAGCAAACATCCATACATCTGTGGTTACAAGGAATTCTTTGTCACATGGGATAAAGAGGAAGCTGCCATGTTTGTGTGTATTGTGATGGATTATTATAAATTGGGTGACTTGGATAAGGCCCTGAAGCAGAAGAGGGCAAAAGGAGAGGCAGTCCCTGAGCTTGTGCTAAAAAAATGGTTTGGCCAGATGGTTAATGCACTTGTTTTTGTTCACAGCAAGAGTATGATTCACAGGGATTTAAAACCAAGTAACATTTTTCTTGCTGAAGATGGCAGTATTTCAGTCGGTGATTTTGGTGTTTCAACGATCATGGATGATGCACGCACGAGAACAAGAACAACAGTGGGCACTATGAATTGGATGGCTCCAGAGGTTCTAGAAAGACCATATGATGAAAGGAGTGATGTGTGGTCTTTAGGATGTATAATTCTTGAATTAGCCACCTGTGGATTTTTAGATCAATCCCAGATATCATCCAAGCTATTCCAGATCAAACATTCTCCGCAAGAGCTCGAGGACGTACTGAAAGAAGTTGGAAAGACCTATGCCAAAGATTTGTGTCAAACAATACGTACAATGCTGAGACGGAACTTTCAACAAAGACCTACAATGAAGGAATTAGCAGAGCTGCCATACGTGAAAAGTTGTATTGCACTTAGTACCAAGCAACCTAAAGGAAGTTCACCATCTCCCTCCAAGGGAGCAAAGAAAGAACCCGTTAAACCATTACCCAAAGACAAAGGTGTTGCCGGAGTCCTTGATTATATGAAGAAGAACAAAGAAAGTGTTGCCTGTCAGGTCCAAGCTCTGAAACATCTGGAACAAATCACGAGAAAACAAGATGTGACACTAAATAAAAAAGCAAAACAGCAAATTGCGGAAACAATGATGAATGAAAATAAAAAACAGGATCCTTCCAAAGACGTCCATCTTCAAGCTCTCAAAATATTTATTAATCTGTTTCCAAAAGCTGACGATAATGATGTGATGTTCTCAGAAGAGATAATCCGCCCAGTTCTGGCAGCAATGAAGTCCCACGTGTCATCATCTGAACTACAAGCTTGTGGCTGTCAAATACTAATGGCCCTATCTGCTGATGAGGCCGCGGCTGAAATTATTGGTCAGTTTGGAGGAGTGCAGGATCTTCTATCTGCCATGAGAGCTTTCCCGAACAGTAAGGCGATCGCGTCCAACTGCTGTGGTGCACTGTGGAGTCTGGCTGTCAGCGAGGCTAACTGCAAGATTGTGTCAGAGGAGCGTGGTTTGGAAGACATTGTGTTGGCGATGGGGAGACACAATACAGATGTGGAGCTCGTGGAGTCAGCTTGCTCTGCATTGTGGTCTCTCTCAATGGAAGAGGAAAATATGGAACTAATGGAGGATCTAAATGTTATCGATTTGATTGTGGATGCTGTGAAAATGCACAAGAAGGAAACAAAAGTCATAAAGAATGCTTGCATGGCCTTGGCGAGTATAGTGGAGGCTAGAGAGGTCTGTGCGTACCAGTTGCTCAAAGCTGAGGGAATAGAAAGCATCATTGCTGCGTACAACAACATGAAAGACAATGACGAAGTTGTCGAGAACATTTGTATCCTGTTTTCTGAGCTCGTTGAATACGAGGACATAAAGGATGAAATGAAGCTCAACGAGAATATAACCAAATTACTCTCCGAGGCCAAAACAAATTTCTCAGGCGACGAGTATGAGGATCTACTCACGGCTGCAGCAGGCGCGCTAGCGATGCTGGGAGGTGGTCAGCGTACAGGAAGGCGAAACAGTTCATCTCGATCCAGACCAAGAAGTGCAGCAAGGAAATAA

Transcript

FUN_043553-T1

TTGGTTTCACCACGGCTTACGGTTTCACGGATTTCTATTAGGGCTTAATTAAGGACTTAAACGATTTTTAAGCAAGGTTTCAAGGACGCAGATTTTTTGTTTACACCACATCACTCAACGCTTCGCTCACGGAATCGTTTACTACGCCTCTTGCCGTCACCTCGTTTATCTGTGGATTTGGTCTCATTGACAGTGTGCATTGACGAATTTCTGTGGACTGGAATTAAACCAAGTTATTGTTTATGTTTCTCAATTTATTGTTGCGCAAGATCGTTTCAATGTGGCCGTTTTGCTGAGACAACTGTGAGTCAGTCGTTGAACCAGATTGTGAGCACAAGAAAACATTGACAGCTGGCGCGAAGTGGATCGCTATGGAGGGGTACAAGCTCCATCAGCGACTTGGCAAAGGCGCTCAAGGGTCTGTGTTTCTGGCTGAAAACAAACAAGACAAGAAAATGTACGTTTTGAAAAAGGTTGAATGTAATGATGAATGTGAAGCAAATAAAGCATTCAAAGAGGCTGTGGCATTACAAGAACTTCAGCATTCAAGCAAACATCCATACATCTGTGGTTACAAGGAATTCTTTGTCACATGGGATAAAGAGGAAGCTGCCATGTTTGTGTGTATTGTGATGGATTATTATAAATTGGGTGACTTGGATAAGGCCCTGAAGCAGAAGAGGGCAAAAGGAGAGGCAGTCCCTGAGCTTGTGCTAAAAAAATGGTTTGGCCAGATGGTTAATGCACTTGTTTTTGTTCACAGCAAGAGTATGATTCACAGGGATTTAAAACCAAGTAACATTTTTCTTGCTGAAGATGGCAGTATTTCAGTCGGTGATTTTGGTGTTTCAACGATCATGGATGATGCACGCACGAGAACAAGAACAACAGTGGGCACTATGAATTGGATGGCTCCAGAGGTTCTAGAAAGACCATATGATGAAAGGAGTGATGTGTGGTCTTTAGGATGTATAATTCTTGAATTAGCCACCTGTGGATTTTTAGATCAATCCCAGATATCATCCAAGCTATTCCAGATCAAACATTCTCCGCAAGAGCTCGAGGACGTACTGAAAGAAGTTGGAAAGACCTATGCCAAAGATTTGTGTCAAACAATACGTACAATGCTGAGACGGAACTTTCAACAAAGACCTACAATGAAGGAATTAGCAGAGCTGCCATACGTGAAAAGTTGTATTGCACTTAGTACCAAGCAACCTAAAGGAAGTTCACCATCTCCCTCCAAGGGAGCAAAGAAAGAACCCGTTAAACCATTACCCAAAGACAAAGGTGTTGCCGGAGTCCTTGATTATATGAAGAAGAACAAAGAAAGTGTTGCCTGTCAGGTCCAAGCTCTGAAACATCTGGAACAAATCACGAGAAAACAAGATGTGACACTAAATAAAAAAGCAAAACAGCAAATTGCGGAAACAATGATGAATGAAAATAAAAAACAGGATCCTTCCAAAGACGTCCATCTTCAAGCTCTCAAAATATTTATTAATCTGTTTCCAAAAGCTGACGATAATGATGTGATGTTCTCAGAAGAGATAATCCGCCCAGTTCTGGCAGCAATGAAGTCCCACGTGTCATCATCTGAACTACAAGCTTGTGGCTGTCAAATACTAATGGCCCTATCTGCTGATGAGGCCGCGGCTGAAATTATTGGTCAGTTTGGAGGAGTGCAGGATCTTCTATCTGCCATGAGAGCTTTCCCGAACAGTAAGGCGATCGCGTCCAACTGCTGTGGTGCACTGTGGAGTCTGGCTGTCAGCGAGGCTAACTGCAAGATTGTGTCAGAGGAGCGTGGTTTGGAAGACATTGTGTTGGCGATGGGGAGACACAATACAGATGTGGAGCTCGTGGAGTCAGCTTGCTCTGCATTGTGGTCTCTCTCAATGGAAGAGGAAAATATGGAACTAATGGAGGATCTAAATGTTATCGATTTGATTGTGGATGCTGTGAAAATGCACAAGAAGGAAACAAAAGTCATAAAGAATGCTTGCATGGCCTTGGCGAGTATAGTGGAGGCTAGAGAGGTCTGTGCGTACCAGTTGCTCAAAGCTGAGGGAATAGAAAGCATCATTGCTGCGTACAACAACATGAAAGACAATGACGAAGTTGTCGAGAACATTTGTATCCTGTTTTCTGAGCTCGTTGAATACGAGGACATAAAGGATGAAATGAAGCTCAACGAGAATATAACCAAATTACTCTCCGAGGCCAAAACAAATTTCTCAGGCGACGAGTATGAGGATCTACTCACGGCTGCAGCAGGCGCGCTAGCGATGCTGGGAGGTGGTCAGCGTACAGGAAGGCGAAACAGTTCATCTCGATCCAGACCAAGAAGTGCAGCAAGGAAATAAACATCGGCTCTTCACATGATCAAAACTGTAGTCCAATGACAACTCAGTGCGAGTAGCGATCTTTGCGCTTTCTGAGCCCAGATTGATCAGTTCTCAACTCAGGATGGTTTCCCTTGCTCTAACCAATTAGATTTTTATCAAAGAGAAACATGGCCAAATCTCTCCGTGTGTTCACTGCTCTATTGTTTTCACTAGTACTTTGATTTCCTTTCCCCTCTCGGACGTGGCCTATATGACATTACATTTTGGAAACTTACTCGACTCATTACAAAAAAAATTCCTAGAAGGACTTAGTTGGTATTTCCGTCCGACATCTTTGTGAATAGACGTGATTTTCTGCCCTGATGTGTCCTTTTTAAGGGTCATTTTCTACAGAAGAGGGTGCCATTTTTTAAGGCCAACGCACTCGGTTCGACCGGGTATAATGGTACAAGTGCCATAGAAATGATTATTTATATGCTTACCCGATATTTTTAATGAAGTGTAGTTTTGTGTGCTGCCGTAAAGCAATGTAAATAAATGCGTGGTTGTATCTAGTATGATCAAGGTTGGTCTACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60DG4	Serine/threonine-protein kinase Nek4 OS=Oryza sativa subsp. japonica OX=39947 GN=NEK4 PE=2 SV=1
Q94CU5	Serine/threonine-protein kinase Nek5 OS=Oryza sativa subsp. japonica OX=39947 GN=NEK5 PE=2 SV=1
Q8NE28	Serine/threonine kinase-like domain-containing protein STKLD1 OS=Homo sapiens OX=9606 GN=STKLD1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005965 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24363 all species →	SERINE/THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17546	STKLD1; serine/threonine kinase-like domain-containing protein STKLD1	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.