Gene detail

Detailed information of FUN_043565-T1 in Acropora pulchra

Genomic Location: ptg000047l:9938861...9958886
NR annotation: XP_029179547.2, ATP-binding cassette sub-family F member 1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_043565-T1

Transcript

FUN_043565-T1

ATGGATCTTGCGGCAGCTGTCGAAGCGGCGGAACAAGAAGTTGACGATGAACTTTCAAAGCTTGACTTGAATGCAACGAAAGGGGAACCCATCGTGCCAGAGACTCGACCAGAAAATACAAGCGCAGATGAAGATGGAACTGTTACAGGAAACAATGAAGAAGAAGGGGCAGCCCTAATGAACTATAATCCACCTGAAGAGAACCCCACAACGGAAAACATGGAGAATACAGCTGATACAAAGAAGTTAAGCAAGAAAGAGCTTAAAAAACTCAGGAAACAGCAAAAATTTGAGTCGGAAGTTCAGGAAGTTGCGGGATCTCAATTTTCAGTATCTCAGCAAGAGACAACAACAAGAACTGGTATTTTTGAAAATGCCTCTGATATCAAGGTAGAGAAGTTTAGTATTTCTGCACGTGGTAAGGATCTTTTTGTGAATGCAAACCTGAGTATCACTGCTGGAAGGAGATATGGTTTAGTTGGACCAAATGGTATGGGCAAAACAACTCTTTTAACACATATCGCTGCCAGGAAGCTTGCCATACCTCCAAACATTGACATTCTTCTTTGTGAACAAGATGTGGAAGCAAATGATGAACCAGCGTTTGAGGTGGTGTTGAAGGCCGACAAGAAAAGACTTCATTTGCTTGAGGAGGAAACACGTTTGATTCAACTGAGTGAAAAGGGAGACGAGAATGCAACAGAAAAACTAAAAGAGGTGTATGTTGAATTGGAGGCAATAGGTGCAGCATCTGCAGAATCAAGAGTCCGCAGGATATTGGCAGGTCTTGGCTTTACAACAGAAATGCAAAAGAGACCTGTCAATCACTTTTCTGGTGGATGGAGGATGCGTGTATCACTTGCGAGAGCTCTCTTTTTGGAACCAACTCTGCTAATGTTGGATGAACCTACAAATCATCTGGACTTAAATGCAGTTATTTGGCTGGACAACTACCTTCAAAACTGGAAGAAGACATTGCTGATTGTTTCCCATGATCAATACTTCTTGGACAGCGTTTGTACGGATATTGTCCATTTAGATCAGCAAAAACTGCACTACTATCGAGGAAATTATGAACAGTTCAAGAAAATGTATCAACAGAAGGTTAGGGAACAAGAGAAAGCCTATAATAGACAGCAAAAGCATTTGAAGGATCTGAAGGCGTCTGGCCAATCCAGGAAACAAGCGGAGGAGAAAACAAAAGCTGTGCAAGGACGGAAAAACAAAAAAGGGGGAAGGAAGGGAGACATGCCAGATGAGGACGACCTTGAACCTGTGGAGCTTATTAAGAAACCTAAGGAATATGTGGTGAAATTCTCTTTTCCGTTACCACCACCCCTCAATCCTCCCATATTGGGTTTGAAATCTGTCACATTTGGTTATCCAAACCAACCCAAGTTGTTCAATGATCTGGATTTTGGAATCGACATGAAATCTCGAGTTGCTGTTGTTGGCAATAATGGAGTCGGAAAAAGTACGTTTTTGAAGCTATTAATCGGGCATCTTGAACCGTTGAAGGGCGAGGCAATACGAAATCACAGACTTCGTTTAGGTTCTTATAACCAGCACTCGGCAGACCAGCTAAATATGGACGATTCTCCTGTAGAGTATCTTCAGAAAAAGTATAACATCAATTATCAGGACTCAAGAAAACACCTGGGGAGATTTGGCTTAGTGAGTCATGCGCACACCATCAAAACCAAGGATTTATCAGGTGGGCAGAAGTCACGTGTTGCTTTCGCAGATTTGGCCCTCAGTACCCCGGATGTCATTGTACTGGACGAACCAACGAATAACTTGGATATTGAATCTATAGATGCGCTAGCAGAAGCCATAAATGAATTTACTGGAGGAGTTTTACTGGTGAGTCACGATGCTCGTCTTATCTTGGAAACATCGTGTCAATTGTGGGTTGTTGAAGATCAGTCCATTACTGAAGTGGATGGAGATTTTGATGATTATCGACAGGAGATATTAGAGAAACTGGGCGAAGAAGTGGTCTCCAAGTCGCACTAGAACCAGCCGGAGACGGAATAAAATTCTCAAGATCAAATCACATATCCCTTTGAATACATGAAAATTCCTGCATATAGTTTACTGGACTTCTTTTGATGTTGCCTTTAGAATGCTGGTGTGTTCTCGTGCAAATGAGGTACAGTGTACCTTCGTTATTTCAGGTGAAGCGATTCTTAAATTGGTAACGTACAATGCGCAATGCTGCAGTCTCGGAAATGTGTCAAGAGACCTTATAACTGTGTGGTTCCAACCACCTATAATGCCGAAACACTTCAGGAAACACAGCGAAAACAGAAACGATCATCGTAAGCTCTTAAACCTCCAATAGCTGCACATGGGCTGGATTTAATGACGTCAACAGTCAACTGCATTTGTGCACGAGTGGTGACTACGGAGGGCGGTTGTGGCTGGAATGGATAGTCAAGCACGCTATACAGTTAGCTCAGAAAGTCCTTATGCATGCAAATGCATCATTGACATTGAGCAAAGTAATTTCAATGTTATTTTTAGTATCTCTTTCATTCACAACCGTGTTGATGTCGATCGTGCTTTTTAGAGAAGTCGATTCACTCGCGGAGCAAATCAGTGCAATTAAGAATCAGAATAAGTAAATTAAGAGTATTTGTGAAATAAAACATTTCTCTATTTTTGGTCCATTGCACCGCTGCCCCCATCAAATCGTGGTCACTTTCTGATAACTAGACCTCAATCAACTGGGGTATTGTGTGCGAAGATTAGGAGCATGCGTAGCAAGTTTTTAGCGGCAATACGCTCTCACCCCGTTTCGCGTGCAAACAGCTTTCAAGCTGAATGCACTCTACAGTCACGTGGATCCGACAAAATGTAACGTTGGGCGATAAACTTGATTTGAAGAAATGTTTTGGCATAAAAAACGAATAAATAAATAATTTCTTTTGATTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P542	ATP-binding cassette sub-family F member 1 OS=Mus musculus OX=10090 GN=Abcf1 PE=1 SV=1
Q6MG08	ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus OX=10116 GN=Abcf1 PE=1 SV=1
Q767L0	ATP-binding cassette sub-family F member 1 OS=Sus scrofa OX=9823 GN=ABCF1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12848 all species →	ABC_tran_Xtn	ABC transporter	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032781 all species →	Domain	ABC-transporter extension domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050611 all species →	Family	ATP-binding cassette sub-family F member, EF3 subfamily	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19211 all species →	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06184	ABCF1; ATP-binding cassette, subfamily F, member 1	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.