Gene detail

Detailed information of FUN_043573-T2 in Acropora pulchra

Genomic Location: ptg000047l:10064657...10073527
NR annotation: XP_044179798.1, LOW QUALITY PROTEIN: endophilin-B1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_043573-T2

CGCCGGTGCATCGCTCCGCATCACCCGCGAAGAGTCTGGACATCAGCAGGCGTTTATGATGCGCACAAAAAGGCGCAATTGGTTATATTTTTGCGCAGCTGATTCACTATGGATTACTTTCGCTCATTAAACGCGAATGACATGGCTGATTCAATGAAGAAATTTGGTTCCCAAACGGCAACCTTTTTTTCTAGGGCAAAGCAGGTTCGATTCCTTTTACCCTATAGGTACTTTGAGTGACATGAATTTTTTACATGAATCTTTGTCCTTTTAGTACACCGAGGAGCAACTTGGCACCTCGGAGAAGACTGTTTTTGATGCAAGATTTGAGTCACTTGTCGAGAAGGCAGATCGTACCAAATTCTGGACAGAAAAACTTCTACGACAAACAGAGGCGTTACTTCAGCGTAATCCAGGTTTAAGAGCTGAGGAATTCATGTATCAAAAGCTTGACAAACCAAAACCTCCACGTTTCACAGAGAATGAAACTCTGGGACATACAATGATTGATGCTGGAAATGATTTTGGTCCAGGAACAAATTATGGCAGTGCATTAGTAAAATGTGGTGAAGCTGAGAAAAAGCTTGGCCAAGCTGAAAGAGATTTAAAGGCAAAATCAATGTCACAGTTTCTGCACCAGCTGAAGAATTTTTTGGAGGGAGACATGAAAACAATTACAAAAGAAAGACGAACACTTTTAGCAAAGAGATTAGACTTGGATGCTTGCAAAACCAAAGTGCGGAAGGCACAAAGCCCTGAGAAAATACAGCAAGTGACATTCAAATGCTTGACAAAAGGTCTCTTTCTCCCTGACGACAAAGCAGAAAAGATGTATTCTTCACGGAACATGGTTGTAATCAGTGAGTTGGACAAGGCTGAGGCAGATTTGCGAGCCAGTCAAGCAGAGTTTGACAGGCAATATGAAGTTACAAAACTTCTCTTGGATGGAGTAAGCACTGCCCATGCCAGTCATCACAGAGCACTTTTGAATTTTGTCGAGGCTCAAGCACAGTATTATGCCCAGTGTCATGCTTACATGACAGACCTACAGAAACAACTTGCTAGTCCACCAGGTGAAGGGGGTCTACCCTTGGCTCCCCCCTCAGCACCTCCTCCTACTTCTGATACTTCCAGTGGGTTTGACCTTAACACTGTTCCCCGACCATCTTTGACAAAGAAGGCAAAAGTACTTTATGATTATGATGCTGCTGAAAAGAACGAGCTCTCTTTGCTTGCTGATGAGGTGATCACAGTTTACAGTGCACCAGGTCTGGATTCTGATTGGATGATTGGGGAAAGAGGAAGTCAAAGAGGCAAAGTTCCCCTCACATACTTAGAGCTTCTTTAATCAATCTTTTGAAAATTATCAAGCAATCAACTTGTACCTTCTGAAATTTTCTTTCTCTGCGAAACCAGTACCATTTCACACAAAATGATACTTACTACACATTTGCATACTATTGACAAGAAAGTACCTGGCTTCCTTGCTTTTTATTATTTTCTTGACAGTAGGAAGACTATGGATTGTTTCTATAGCAAAGCTTAGTTTTGGGTGAGTTAATGATTTAAGGGACTGTAAACCCAAGGAGGATAGACACATTGAAATCATTGCATGTTACAAGTGCTCGGGGGAATGGAAACTATGAACTTTTGGAGAACAAAGTTGTCTTGAATTTTGTATCATAATACAAATGTCTTAAAGCTAGACACTAGGATAAATAAGTCAAATTTAACATCTTTTTACCTTAGTTTTGTTTGTGACTTCTATTTAGTTATTCTCCGAGTTATATACCGAGTTTCTGCAGAAAGAACAAGTCTTGTTGTGGGGGGAAGTTAAAAGTAATATTTTTTTTTGCACTCCTATAATTTCTTGGTTGTTTTCTATTGAAACTTGTTATGGACATGCTGCTAAGGAAAAAAATCGTTAATTTTGCACATAGATGATTGCTTTATTTTGCGGTTGTAAGAAAGAAATTTAAAGCAATAATTATTTAATTATGGAAATATGATTTGTAGTGCTCTGTACTTAAGAAGTAAAATAAACAGTTGGGAGCCTCCTGGGTGGTTTGTTGTGTCTGTCTTTGAGAAAAGGACTAGGGCGTAGATGCAAGCGAGCTTTGGACCTCAATGCTTTTCAGTCACAGTCACTTGTGTTCATTAGCAGGCATTGGGCAAAGCTGGGAAAAAGTGGTGTAAGTGAACGATTTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JK48	Endophilin-B1 OS=Mus musculus OX=10090 GN=Sh3glb1 PE=1 SV=1
Q5ZIR1	Endophilin-B1 OS=Gallus gallus OX=9031 GN=SH3GLB1 PE=2 SV=1
Q6AYE2	Endophilin-B1 OS=Rattus norvegicus OX=10116 GN=Sh3glb1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003573 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03114 all species →	BAR	BAR domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050384 all species →	Family	Endophilin/SH3RF	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167 all species →	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0061024 all species →	Biological Process	membrane organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11248	SH3GLB1; endophilin-B1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.