Gene detail

Detailed information of FUN_043583-T3 in Acropora pulchra

Genomic Location: ptg000047l:10206327...10225322
NR annotation: XP_029179942.2, DENN domain-containing protein 1B-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_043583-T3

GACACGCGAAAATGCATTTGATGATAAATTCCGAAAAAAGCTTTAAAAAGTAATAGCTCTTCCGTTAGAACGGATTGATTGCCTTGGCTACCAGGCACACAACAACTTCATATTTACAGAGGAGAAAATCGCAGAAGTTTCTCTACAAAAGACTGGGCATATCATATGGCAGGCAGTGGAATCGCATCGACTCACACGCAGTAACAGTTTACTGGTTTGATTACACCTCCTTGCCACACCAACCTTTACCTCCAATTTCATCCTTTCCGCTTCTTTAGGGCCTCACCCAACTTCCTCCCCGGCCAAAATGACGCAAGCGCACAGCTATCGGAAGTTGTTGTGAAACAAATATGGCGGCCGGCTAGTGTTGGTGTGCTATCTTCGTCTTTCGCGCGATATGGGCTCCAGAGTGAGGCCTTCCCCTGACAAAATTTTCGAGTGTTTTGTTGAAGTCTCTGCCCCAGAAGTGAATGGTGAAGGTCCGGTTATCAAGTTCATTCATCCCATAGACTTCGATGAAAAAGATGCTTTGAAGACAATTCCACAGTTTTGTTTCCCTTGTGTCTCAAGCTCAGATGCTGTGCAGCACTACACATTTGTTCTTACAGATATGGACAGGATATTCCGATTTGGTTTTTGTCGTTATTCCCCTGATGTGAAGACTTGTCTGTGCATGCTCAGCTATTTGCCATGGTTTAAGGGTTTTTATGAACTTTTAAACAGGTTATCAAACTTTAGAAGAGAGAGTAAGGACAGTGATGTCCTCCAAATATTAAACTTTCTTCTAAGTCAGTCACCACCTAAGTCTGGATCACCTCTAACAGTCAAAACTGGAGATGCTACAAAGGACTTCATCTTTGAGGCCCCGGATACTTCAAAGTTGCCAACTATACCAGAGGACAGGAACCTTACTGACTACTTTGCAGCTGTAGAACCTTTAAACATGATTTTAATATTTGCAAGCATGTTCTTCGAAAGGAGAATAATAGTGACATCAAAGAAACTAAATTTGCTAACTGCTTGCACATATGGTGCAGCATCTTTGTTGTATCCAATGCATTGGCAACACATGTTTGTTCCTATTGTTCCCCCTCACCTCTTGGATTTTTGCTGTGCTCCAATGCCATTTCTGATTGGAATACATGCATCATTAATGCCAAAAGTGCGTCAAATGCCTCTGGATGAAGTTGTAATTGTTGATGCAGACACCAATGTTGTTGAAAGTCCATTTGACGATTTAGCCCAACTGCCATCTGACACGGTGTCTACCCTGAAGAGCACGTTAAAGAAGCCAGTTTATCCAATTAAAGACAAGGTTTCCAAAGCGTTTTTGCGCGCCATGGTATCATTAATAGGCAGCTACAGAGACGCATTACGCCTTAAACCAGGTGAAAAGATCATATTTGATCGAGATATATTTGTTCAATCAAAGTCTAACAGCACGAAACATCTTCTTGAGTTAATTCTTCAACTGCAACTCTTCGAGCAGTTCATCGCAGAAAGACTGGACATGTTGAATGCTGGACGAGGATTCAATGATGCCTTCGAAGAACAAATCGGTTTGCAGGCAGAGTTGGATCGAGTGCGCTGGAAGACTCAGTATCAACTATGGATGAAGGAAACAAAGAAATCTGGAGGAGTGCTCCTGGATAAGACGGAGGAGAAGATGAAGAAAACTTGGAAAGGAGTAATGGAGAACCTTTATAACGCGAAAACTGGAATCAAATGTCACTTGAATGAGGTCAAGGATAAACTTAAAGGAAAGGAAGATGAAGAGCAGGAGGGAGACCACAAAAGAGCGAACTCCAGCCCAATTTCATCTAGACCTTTCGCAACTTACAAACTCTCACCCCGGTTTAACAAACGAAGAACCGTTTCGCCAGTTGAGTTTGACACGATCAAACTGGAAACTCTGTCTCAAAGGAAGCCTCCCCCCAGGCCCCCTCCGCCGCGACCTTACTCATCTGAGAGGCGCCCGCGAACATCGGCGCTGTCGACATCGGAATTCTCTCCCAAACTCCAGGCAGGATGCAGTGCGCCAAATCTCCTGGGAGACGCCCGCGTTGGTGAACTTGTCTCATTGAATGATGACTCGTCAAACACGTCAAACCAGAGTTCGTCTTCTCCCAGCGCGTTTGATAATCAGGTGAGGTAACGCGCTGGGTCAACCCAATCGGAAACAAAGCGGCTATTTTAAGATGCGTTATTTAAATGACTTTAATGTTGTTGTTGCTGTTGTTATTATGATTATGATTATTATTATTACTAACGTCATCATCGTATTGTTTTTACTATTATTATTATTATTATTATTATTGTTATTATCGTCATTGTTATTATTCGGGATGTTCTGAGCGAAGTATATTTGAAACACTATCATACTAATGGTCAGCAATTTTTGAGCGCGGAGTATGCGCATTGGCATGCAGATCAATGTCCCTTACCACTGGGTTTGGGTTTCGCCGCCTCCTTTATTATATATATACAAGGCCACTTTCATGCAATAAACCTATATTTCACCTTGTGAAATATAAAGAAGACAGAATTCTATTTGGAAGGTTTATTATATGAAATTGGCCTTATATATATATATATAACGAACAAATTACACCATAGAAAGTTCTTTGTACGGATTTTACTCACTCGTTGCAAAACTTCAGAAACTCACTCGTTCGCGACTCATGAATAAAACTCCGTACGGCGCACTTTCTATGAAGTAATCTATTTTTATCTTGCAGTCTCTTGTACACGATCAAGATTCAAGTCAACTTGGATCGACTGAAAAGCCCGTCGACTCGAGTTTGTGTCGGACTCGTTTGGGTGGACGCAACCCGAATGGAAGTGATGCATCTTTAGAGCGTAGTGGATCATCTCCGTCTCGACCGAAGCCACCTGTTCCCGAAAGACCTGCTTTGGTCACTAAGAAATCATTGGGTTCTGTGGATGCGATTTTAGAAACTTCATCTAGGAAGCCGAGTGATGTCATGTCACCTCTGAGGCCTGTGTCTTTATCACTGTTAGAAGATACAATGGCGTCGCTCCCTTCAGATACACAAGAATTTTTCTTCCCAGATTCTGACATCAAGCTTCTTAATCTCAGCGCAAATGAGTCAAATTCTAAAACGAGCGTGAGTTATAGCAGCGACTTAGTGGCAAATTCTTCGAGTCGAGAAAGCAGTGAAAGCTCGCGGAATCATGTTGAATCGATGGGAATCAAGAGAAACAGTGGATCCTATGACAATTTGTCACGTACCAACCTTGAAATGACAACCTTGAACCGAGAAATTAACAGCGAACAAACCAAGACTGATAATAAAAAGCAAACTTCTAATCCAGAGCATAATTGGGTTAGCTTTGGCTAGGTGAGAACTCAGTGTACCAAGCCGTGACTCAGAGTGTTATTTCCACTGATTTCCCGCAACCTTTGAAGTCGTGAAGCAAGCTGTAGGTGGTTTTCATCTTGTGAGACACCGATAACAATGGTAAAATGTAGAATTGCTGGTGGAAGAACAAAAAGGGCTAACGAAAGATCTATTGTTTTCGTCCACCAACATGGCGGCGATCACGTAACGTGCAAACCACCTATATACTTTATACCTATTTTTTTAACCACTCGATAATGCCAATTTAAGCTAATTGAATGAAATGGTTATATTTCTTTTATAGCAGTATAGATCTGCACTCGTGTCTAGAAATTCGCAAAGTGAGATGGATGCTGAAATCTTCTCTTAACGTCAAAGCGCGAATTGATTATGGTAATGTTTGGTTTGGGGTTAACACAGCTGTATATGTTTATTTGAGAAGCAGAGTTTTAGGAACTTTTGATCAGCATTAATCCCAATGTGTGGTTGACATTGAAGGTCCAGGGAACACGTTTTGATGCTTAAAACAATGCGCTCGCATCTCATTTCACGTATTTTGGCACAAGTTCGTAAACTTTGGTATGAAAACTTTGTCCTCATAGTCGAGGTCGTTGTAGAAACCTTTCTACACTTAAATTTTACAGTCACATTTGCATCTCTGGCTGAAAGCATTAGCTTAACTTGCAAAATGCAGTGGACGTCTGAGTAATTAGTGTAAATAGTAGTTTTATTGAAAGAAAAAAGTATCTTAATTTACTTAATTATTTGGAGCCATGGACAAATGGATGTTTTTTTAAGCAGGGTAGATTGGGGTGGGGTTGGGTGGTTAGTACTATTTCTTTTGATAGATGAGTGTATTATACCGTTTCCAGAATGAAAATATTACTGTTTATGATGAAATTTGAATTAAATTGGCCGCAACTTAACCTGCTTGGTACTTCCAAGGCTGTCCGAGAGGGGAGGGGCAGGGGTGTTTAGGTAAGGAAGCTTTCTATTAACTCGCATGAAACCGTGAATTTACAGAAACAAGCCGTGGTTTGAGCTGGACGCCGCAGTGTTTGGTGGTTATTTTCGAGATTTCGATTTTAATTACGTGGGAATTTGTCTTTACAAAGCCCGAAGGACACAACTTCACAGGCATTTTCAACTTCTTTCAAAACGGGACTCGGGCCTGTTTGTCAAAAGTCCCGAAACTTCAGGCGTATTTCGGGTGCCACGATCCCGTTTATATCTTCGCAACGTCGAGGTTCTAAGCCATCAAACTTTGCAATCCTTTTGGTTTTTCATACATTAAAAACATGTTAAAAGATCATCTTTTTTTAAAAGCAATTGGATTGCAGTTTGACATGTGGCTTTTCATTGAATCGTGCAGCATCATTTGCTGGCGTCGCGATGTATTTGGGGGTTCGCCGCTCGTCTTCCACAATTTCACCCAAGCTGAGGTTAGAGGAAATAAACATTGGCACTTATTTATTTATTTTACATGCTATGCTCGAGGATTCGTGATTACGGCGATGTATTGGCCAAATTAAATGCTAGCGTAACAGGCTTACATTACAAAACAGATCAATATCCTATTCGGAATTATTGATTTGTTTCCTACACTTCAATCAATAAAACTCAATTTGACAGAGCTAAGGAACAGATTAAACTAAAGTCGTTTTGTTTCATCGAAAAACAAAACAAAACAAAAAAAAAACGACGGCGAAGGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U1T9	DENN domain-containing protein 1B OS=Mus musculus OX=10090 GN=Dennd1b PE=1 SV=3
Q68F67	DENN domain-containing protein 1A OS=Xenopus laevis OX=8355 GN=dennd1a PE=2 SV=1
Q6P3S1	DENN domain-containing protein 1B OS=Homo sapiens OX=9606 GN=DENND1B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003810 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040032 all species →	Family	DENN domain-containing protein 1A/1B/1C	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13196 all species →	DENN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:1901981 all species →	Molecular Function	phosphatidylinositol phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20160	DENND1; DENN domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.