Gene detail

Detailed information of FUN_043618-T2 in Acropora pulchra

Genomic Location: ptg000047l:10853122...10857366
NR annotation: XP_015755348.1, PREDICTED: bone morphogenetic protein 8A-like isoform X1 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_043618-T2

CTCGAAGGTCAGGATGAGATTGACTGAAACTCAATCTACATACAACATTGTAGTAGAGGTAGAAGGCGTGATTGATGTCCACTGCGCCAGCCTGACTTCCCAAAGAGTACAGCACAGGGTATTTTATCTAGATGGTCATCACCCCTCCCGATATCAACCCCACCCGATATCAACCCCACCCAACAGACGGGAACCGGTGTTTTCCCTTTGGTGATAGCCGCACCGTACTTAGGTAATGCTTTGATCAGGTAGTGACAAAGTTCTTTGTATCGTGATCTCATTTTTAACTTTTATCTAAAACAATATTCTTGAGGCTAAGTACACTGAGACAAAGGTAAACACAAAGTTTATTGAGCTGGAAACGGAGATAGGAGTTGCAGCGTTGTCATTCGTTCAGACTCAGCGCACAACTATTGGCAAATCAATGCAACTGGCAATGGGAACAAATATAGAGCTGGGAAGACTGATTGGAAAAACGAGCTTGGAGGGAGCCTGAGTCTTCTTTCCCCAGTCACCAACCGACCAAATTGAGCATTATGCTTCTTTACGGTGACGAAAATAAGTTGATAAGGAACAAGTTCATGCAGTAAACGGATTACGAAGCCGACATCCTACTTCTCCCCCCTGTTTTGTTTTCTTGTTGTTGGATTTTTTTGCGTAGGCTGTTTTTTTTTCTTTCTTCTTTTTTTTTTCTCTTTTTTTTTTTGCGTTTCGAATCGTTAAAGTGTTCCACAGTTTATGCAAGAGAATGTGCTGGGTCTACATGTTGTGCCGACGACTATTCCATATGCAAGCTGACGATCCGAGAATACTTGATCATCTAATTCTTTAATATCGCTGAATACACAATACTGAATAACACACTGAATACACGCCCATTTAAATTGGCGTCACGTGGTAACATGACATCACAATAACATCACAACTTCTAACACAACATACACGCATACATCACAATGTAGTGAGACATTTGATTGTTTTTGCATCGGTCAGCGTGCAAAATAAGAACGCAGAGGTATTCTAATATAGACCGCATTTTTTTCTGCAAGCTGTTGTTTGTTCCTTTTGTGTTTCGTTATAAACGAGTTTTAGAGGGTTCTTACACCAAGGATAATCCAGACCCCAAATCCAACGATTCCTTGAAATGGTGCATTTCAATTTAAGGTGCGATTCAGTGTTAAACGTTTTACATGTCAGTAATGGAGGAGTGAGACAAGAAAATGTTGAACCCAAACGAAAATGGTAGGAAAGTGTATCATTATTGACACAATAGCTTAAGAAAATAGACTTTAAGGAGCGTAGCTGTGATAAAAAAACCACAGAGACAAATTTCATTTCAATACTACACCATAACCCTAAGGCATTGACAATCAACACTAAATTATATTTGTTGTAAGTGCCGTTTTTGGTAGGTCATGAGGTGAAATTATCCTTTCATATATAGCCCATGAACTGTAGCCTTCGTGTTAAGAAGGAAAATCACGGTGTGGAATTGACGCAGAGCCGAAATAAGATTCCGTCGTATTTGTTTAGACGAATAATTAAAGTAAAAACGGAAAATTGGAAAATATAATTAAAATTGACAACCATTCTTAAACTTCTGAACTGAAATTTTCTTAACATCTTGCATGCTACGCTTCAAATCTTACTTAACGTGCATCTATGTGCTGATTTCTGCAAGTTCTGGAATAGTACGTATTCGAAACACCCAAACGTAATTTCATCTAACTCACTAACGACTGCAGATTGGTTAGAAAATAACACCCATTGCTCTTAGTTAGACATAACAAGCGATTTAAAACAATAAAGTTAATTAAGGTCGCAAAATGGCAGGGAATTATTTTTAAACAAGGTACTTGAACAAAGCCGTTCTGGTATTTTTTGGACGTGGAAATAGCAAGTGTGTTATCTTGCAAGTGAGGAAGCTGTCTGGTCTGTTTTTAAAACAATCATTGTTTCGTTGTTTTGTTTTGTTCTGTTTTTTCTTTCTTTTTGGAAAATAGTAGGTGTGCAACTAAGAACGGCCCGTTTGATTCTTTGTAATCCATCGCCTTTCTGAAATATTTCCTCCGCACCTTCAACGCTTGGCCAAATTTCAAAGAGCCCTTTTGAGTCAGCAATTGACGTATGTGGATTGGAGCGTGAAAGCTGTCATATCAACAAGTGTAATTCACTGATGCATGTGCATAAATATTCGGTATGGATATGGGGTTAAAACGTTTTATTGAGACATAAAGCTGACCGCCGGCCTCTAATGAACCGTCAAAAAGACGACTGGACTGCTTGAAAGAGGCTTAGTATTGTTGTTTATAATAGTGGGCCACAATCTCGTAAAGTCTCTACTATAATTTGTCCTTCAAGTCGATAAGAACATTTCGTCTAGCGTGTGGCAGTCAAATGGCTCTTCACTCAATGTTTACGCCATTTCTTGTGATTAATTTATCACTCTACTTTTCACATGGCGTGTTCTCGGACAAAACTTTTCGTCCACATGGTGGGCTATTAAGAGGACTCAATTCAAGCCGAGGCAAACACAACGAGAAGAAGTCACACATAGGCAAGGAAGCTGAGGTTCCAAGATTCCTTCTTCATTTGTATAGAAAGCGAACACATTTACCTCGAGGAAGGTTAAGTGGACGCGATTCCGACATAGTAAGAGTTTTCTTACGAGAACCGCTAGGGAAGGATCAGCAGGATGGGCCACTCAATCATTTTCTAATTTTCAACTTGTCTGCCATCGCCTCCAACGAGAACGTAAAAAGAGCAGAATTAAGAATTTACAAGAAGAAATCAATGAAGCATGGCAACAACACAGGAGGGAATCTCAAGATAAGAGTGTTCCCTTTGAAGATGGCACAGAACAAACGCCATCATCCACAAAGAAACAAAGCTTTTTTGGCTTCCCATGTTATTAGTTTAAGGGAAAATGTCGGTAGATGGATTGCTTTTGATGTAACATCTGCAATTCAATTTTGGAAACAAAACCCAGGAGAAACTGACTTTGGCTTGAGGCTGGCTGTTCAAGGAATGAAGGCCTTTCCCACAGAATTCCGTATTGATAGCCGAGGAAAAAGAGCTCCTTTCCTTGTCACGTATACTTACAACCCACCAATAAAATCGTTCCGGTCTTCCAAAGCCTTGCAAAATTGCAGTAACACTCAAGCTTTAGAAGGAGACGACCTTCTTCATAACAACTCCTCAACGTCAAGAAATCGAGGGAGACGATCCGCCGGCCATAAGGAGTGCAGGCGAAGGTGGGTTTATGTGCAATTCAAAAAGCTGAGGTGGAACTGGATTATTGCCCCAAGTGGTTACAGTGCAAATTATTGCGAAGGGGCATGTTCAAGCGTGCTTCATATAGCATTGGAGCCAACCAATCACGCCATTTTGCAAAACATTCTTCATAGAATGGACAATCGCATACCGTCGCCTTCTTGTGTACCCACCAAATTGCACGGTATTAGCATTTTGTACAGAGCAAGCGATAGGTCGATTGCATTGACAGAATATGGTGGGATGGTTGTGTCGACATGTGGGTGTCATTGAGTTGATTTCACAGTTATCCTCTGGCCGGAAACCCAGTTGGTAGAATCCAACAGGGGTCGTGTTACTAAAATCTTCAAGGAAGTCTTTCCAAAAGCAATTAAGCACTCCCCGGCTCTTCCATGACGTTAATGTTGTTGTTTTCAAAGTGGGCATTTCCCAACTACGCACTTTTAAACTCTTGAATCTTGAAGAGGATATTGATATAGCACCAAAACGACTCTTTAGTCGCACAGTCACTTTCGCTTGTAAAAACCATTAACGATTACCTCTACATACTATACTAGGTATGAAATGTAAAGATTTAAAAGAGTCTTTGGGATGATATATTATATTTATTAAAATGAATATCTAAATCATTAATGTCAATCAGTGCAGGCAACGGAAGTAGATGCAATACATCTGGTTGTTTCTTTTCGTGTGTGTTTATCAGTGTACGAATGGTGTTCTCTTGTTGAATATGCAACTTATTGCATAGCATATTTAACTTCTTTGACAATGAAAGTTTCATCAAAATGTTTCTATAGATGTCAGAAAATTGCTGTATTTATTGATGTAGTTCTACTTAAAAAAGACGGGCTTCATTAAATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34821	Bone morphogenetic protein 8A OS=Mus musculus OX=10090 GN=Bmp8a PE=2 SV=1
P22004	Bone morphogenetic protein 6 OS=Homo sapiens OX=9606 GN=BMP6 PE=1 SV=1
Q7Z5Y6	Bone morphogenetic protein 8A OS=Homo sapiens OX=9606 GN=BMP8A PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000495 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00688 all species →	TGFb_propeptide	TGF-beta propeptide	Family	Interproscan
PF00019 all species →	TGF_beta	Transforming growth factor beta like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015615 all species →	Family	Transforming growth factor-beta-related	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR001839 all species →	Domain	Transforming growth factor-beta, C-terminal	Interproscan
IPR017948 all species →	Conserved_site	Transforming growth factor beta, conserved site	Interproscan
IPR001111 all species →	Domain	TGF-beta, propeptide	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11848 all species →	TGF-BETA FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04666	NODAL; nodal	-	Cytokines and neuropeptides	ko04052	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.