Detailed information of FUN_043705-T1 in Siderastrea siderea

Genomic Location: contig_57:3148218...3165341
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_043705-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR036507
all species →		Homologous_superfamilyTelomere repeat-binding factor, dimerisation domain superfamilyInterproscan
IPR030657
all species →		FamilyTelomeric repeat-binding factor 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46833
all species →		TELOMERIC REPEAT-BINDING FACTOR 2 TERF2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0000781
all species →		Cellular Componentchromosome, telomeric regionInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0031848
all species →		Biological Processprotection from non-homologous end joining at telomereInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_043705-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_043705-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
129.6Max TPM
3.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 10.58 129.57
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 1 1.52 28.88
Whole organism 4 4 5.02 10.95
unannotated 1 1 3.43 3.43
live coral tissue/skeleton 1 1 5.83 5.83

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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