Detailed information of FUN_043845-T1 in Siderastrea siderea

Genomic Location: contig_57:4918961...4951779
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13637
all species →
Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF00536
all species →
SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF00023
all species →
AnkAnkyrin repeatRepeatInterproscan
PF12796
all species →
Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00013
all species →
KH_1KH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR013761
all species →
Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR036612
all species →
Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR001660
all species →
DomainSterile alpha motif domainInterproscan
IPR004088
all species →
DomainK Homology domain, type 1Interproscan
IPR051631
all species →
FamilyAnkyrin repeat and KH/SAM domain-containing proteinInterproscan
IPR047373
all species →
DomainMask-like, type I K homologyInterproscan
IPR004087
all species →
DomainK Homology domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23206
all species →
MASK PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0045087
all species →
Biological Processinnate immune responseInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16726ANKRD17, MASK; ankyrin repeat domain-containing protein 17-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_043845-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
17TPM > 0
7Conditions
92.2Max TPM
11.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 2 6.83 92.16
holobiont · control.pH_high.temp 20 4 10.29 83.72
holobiont · control.pH Control.temp 19 5 14.62 72.32
Whole organism 4 4 64.78 74.84
unannotated 1 1 34.63 34.63
live coral tissue/skeleton 1 1 38.81 38.81

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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