Detailed information of FUN_043932-T1 in Siderastrea siderea

Genomic Location: contig_58:292826...335316
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01426
all species →
BAHBAH domainDomainInterproscan
PF21744
all species →
BAHCC1-like_TudorBAHCC1-like, Tudor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001025
all species →
DomainBromo adjacent homology (BAH) domainInterproscan
IPR052429
all species →
FamilyBAH domain-containing proteinInterproscan
IPR043151
all species →
Homologous_superfamilyBromo adjacent homology (BAH) domain superfamilyInterproscan
IPR048924
all species →
DomainBAHCC1-like, Tudor domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12505
all species →
PHD FINGER TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →
Molecular Functionchromatin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_043932-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_043932-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
22TPM > 0
7Conditions
117.4Max TPM
8.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 4.19 27.53
holobiont · low.pH Control.temp 20 2 0.59 5.96
holobiont · control.pH_high.temp 20 3 1.70 17.63
holobiont · control.pH Control.temp 19 6 4.94 25.91
Whole organism 4 4 109.27 117.45
unannotated 1 1 49.66 49.66
live coral tissue/skeleton 1 1 43.31 43.31

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP