Detailed information of FUN_044112-T1 in Siderastrea siderea

Genomic Location: contig_58:2668690...2696364
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09783
all species →		Vac_ImportDegVacuolar import and degradation proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018618
all species →		FamilyVacuolar import/degradation protein Vid24Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14534
all species →		VACUOLAR IMPORT AND DEGRADATION PROTEIN 24Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006623
all species →		Biological Processprotein targeting to vacuoleInterproscan
GO:0007039
all species →		Biological Processprotein catabolic process in the vacuoleInterproscan
GO:0034657
all species →		Cellular ComponentGID complexInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0045721
all species →		Biological Processnegative regulation of gluconeogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23335GID4; glucose-induced degradation protein 4-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044112-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
45.0Max TPM
1.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 21.90 31.21
unannotated 1 1 17.30 17.30
live coral tissue/skeleton 1 1 45.03 45.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP