Detailed information of FUN_044147-T2 in Siderastrea siderea

Genomic Location: contig_58:3154478...3209071
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004434 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00330
all species →		AconitaseAconitase family (aconitate hydratase)FamilyInterproscan
PF00694
all species →		Aconitase_CAconitase C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001030
all species →		DomainAconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domainInterproscan
IPR015931
all species →		Homologous_superfamilyAconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3Interproscan
IPR050926
all species →		FamilyAconitase/IPM IsomeraseInterproscan
IPR006248
all species →		FamilyAconitase, mitochondrial-likeInterproscan
IPR000573
all species →		DomainAconitase A/isopropylmalate dehydratase small subunit, swivel domainInterproscan
IPR015932
all species →		Homologous_superfamilyAconitase, domain 2Interproscan
IPR036008
all species →		Homologous_superfamilyAconitase, iron-sulfur domainInterproscan
IPR018136
all species →		Binding_siteAconitase family, 4Fe-4S cluster binding siteInterproscan
IPR015928
all species →		Homologous_superfamilyAconitase/3-isopropylmalate dehydratase, swivelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43160
all species →		ACONITATE HYDRATASE BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003994
all species →		Molecular Functionaconitate hydratase activityInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006099
all species →		Biological Processtricarboxylic acid cycleInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01681ACO, acnA; aconitate hydrataseEC:4.2.1.3
Carbon fixation pathways in prokaryotesko00720deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044147-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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