Gene detail

Detailed information of FUN_044281-T1 in Siderastrea siderea

Genomic Location: contig_58:5173630...5188858
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_044281-T1

ATGACTACGAAAGACAAACCACTACAACAGTTGTCTTCAAACGCAGTAACTGCGAAAGAGCTAGCAAGAAGTCTAGGTTTGGTCAAAAAGAGGCCCTCTTCGTCCACAACCCGAGCAAAAGGCCAAGAAAAGGATGTCAAGCCTAGCCAGTATTTTGCATACCTGATTGTTCTGGACTTTGAATCAACATGTTGGAAGGACAAGAAAATGAACTATGGCCCTGAAATAATTGAATTTCCTGCAGTGTTCCTTAATACTTCCACTGGAGAGCTGGAATCCGAATTTCAAATGTTTGTTCAACCTAGTGAACATAGGAAACTGAGTGAGTTCTGCACAGAGTTGACAGGAATCACACAGACTCAAGTGGATGAAGGTGTTCCGATTGGCACGTGTCTCATGCTGTTTGGACGCTGGTTACAGGAGATCAGGGATAAAAAAGGCTTCAACTTTCCCTGTGATGAGGTGCAGAAAAAGGATCGAAAACAACACATTGAGAGTTCAGCCAAATGGTGTACATTTGTGACGTGGTCAGACTGGGATCTGGGGACTTGCCTTAAGAACGAGTGTTACAGGAAACAGTTAAGAATGCCACACCCACTGAGGAGCTGGATTGACCTGCGTGCAACATACAAGACATTTTACAGTCGCAAGCCACAAGGATTGGCAGGTGCCCTTCAAGACTTAGGAATCAAATTCTCTGGGAGAGAGCATTCAGGTTTGGATGATGCTCGTAACACCGCTCGTCTGGCGTGGAGGATGGTGTCTGATGGCTGCGTCATGCAGATAACAAAGAGCATCGATGGGacgGTGGAAAAACTCTGGAGTGTTGTGACTAAGAGTGGTGACTCGCAAAGAGATTCAAGACAAAATGTTACTGTAATAACGCATGCCAATTCCAACAACAAGGAAGTCTTCGGGTGTAACGGCAAACCAGCACCGCAAACCAAGCTTCACGCTTTACCAGCTACAACTGAAGTGACAAATTTGCAAGATAGTTTAAACATTTCCAGAGTGGAAGTTGGAAAGCAAAGCGGAGCTGGCGTGCAAAACCACAGCAGTTCAAAACTTGAAATTACTGGATCAGGTCGTAATGGTGACTCGTGTGGTAAAATGACTAAGGTTAAAGAAAGAGGTCTAAGAATTCAAGAAAACGGAGCTAAAGCTAATGAAAATCTCCAAGATGGAGCTAATCTTAAAAGGAAAGCAGCAATAAGCATTGGTAGCTTAATAGGTTCGGCAAATGGTTCTGCTATTGGGCCTGTAAATGTCAGTGCCACAACCAACAGCGTTCCTAAGTGTCTCATAAGTCCAGCCACAAGTTTGTCAAGTCTGAACAAACGAGCAAGAGAATCTTTTGCTGGTGACTTCAAAAGTGAAACACCCAAGTCCATTATGCCTGGGCTTCTTTGGAAAAGAGGTCTTGTTAAGCAGACATTGCGCTACAACCAACACACGCCTTCTGGTACTCTTATTCATCAAACACCGCTCGGAATTGGTCAAGGAGCGAATTCCACAGCTAATCAGCCGTGCAAGGTATCGAATGTTGAGCCTCAAGTTGTGACCACGCCCTTGTTCAGGGTACCGGGTAATCGCACCTCTCTCGCAAATAAGCAACAAGAAAAACAAGGACATGACAAAGATGCTCATCTCACAACATATAATTCAGTATCTGGTAGAGACTTAGAACAAACAACTAGCGAACGTGGGGGAACACCTTCAGTTGTAGCCAGAAACTATCCAGTGCTCTTACCAAAACCTCGTTTAAACTCTAAAGGGAAAATACGCCCTTTCACCCCACCCCTTGGTGTTAAAACGAAGGTAACTCCCAAAGCCACCCCTCCCGTTGCTTGTTTCAATGGAGGCGGTGTTACTCCGCCACTGTGCAACTGCGGTCGCCGCACTCGACGAAGGTCGGTCACCAACCCAGGACCTAACCAGGGAAGAGCTTTTTTCACATGTTCTCTGAATCATGGCAGGTCAAGTCTGCGTTCGAGTGCTGATAAAAGTAAAGCCAAAAGTGGCTGTACGTTTTTCCGTTGGGAGGTTCGTTTGTAG

Transcript

FUN_044281-T1

GCGGTTTTCGAACTCGTGTTCGAACTTTTCGGTCGTCTTATACGGGGAAGAATCAAGGTATACTCCATTGGATTTCAGAAAGGGGAACTTAAACCACTACTTTGTGAGTACGGCGAGACAAAATGTAAGTGCATGCCTTTTTTCGCGTAAATTTTTAGCTGTTTGTCGAGGCAGGTTCGATCGCCGAAAGGGCTCCATTCTCCAACCTTGTCTTCTTCttatacactgttagggtagaagattaaaaacctctccaaaggtGCTAAAACTTCACAGGAAGACAGCAACAACACCAACCTTCTAAAGTCCATTTATTTTTGGATAGGAATTCtcagttcaatttttcatacaaactcttatattacgcttgggTAACCTGTGGTTGGTTGATTTCTACAAGGCGCATCACTGAGAGGGACTATAACCAAGTTTACACCGCTCGTCTTCTTCGCTGCGCGAATTTTGAATGTATTCGCTTCTTTTTGTTCCTTTCCCGTAACAAATGACTACGAAAGACAAACCACTACAACAGTTGTCTTCAAACGCAGTAACTGCGAAAGAGCTAGCAAGAAGTCTAGGTTTGGTCAAAAAGAGGCCCTCTTCGTCCACAACCCGAGCAAAAGGCCAAGAAAAGGATGTCAAGCCTAGCCAGTATTTTGCATACCTGATTGTTCTGGACTTTGAATCAACATGTTGGAAGGACAAGAAAATGAACTATGGCCCTGAAATAATTGAATTTCCTGCAGTGTTCCTTAATACTTCCACTGGAGAGCTGGAATCCGAATTTCAAATGTTTGTTCAACCTAGTGAACATAGGAAACTGAGTGAGTTCTGCACAGAGTTGACAGGAATCACACAGACTCAAGTGGATGAAGGTGTTCCGATTGGCACGTGTCTCATGCTGTTTGGACGCTGGTTACAGGAGATCAGGGATAAAAAAGGCTTCAACTTTCCCTGTGATGAGGTGCAGAAAAAGGATCGAAAACAACACATTGAGAGTTCAGCCAAATGGTGTACATTTGTGACGTGGTCAGACTGGGATCTGGGGACTTGCCTTAAGAACGAGTGTTACAGGAAACAGTTAAGAATGCCACACCCACTGAGGAGCTGGATTGACCTGCGTGCAACATACAAGACATTTTACAGTCGCAAGCCACAAGGATTGGCAGGTGCCCTTCAAGACTTAGGAATCAAATTCTCTGGGAGAGAGCATTCAGGTTTGGATGATGCTCGTAACACCGCTCGTCTGGCGTGGAGGATGGTGTCTGATGGCTGCGTCATGCAGATAACAAAGAGCATCGATGGGacgGTGGAAAAACTCTGGAGTGTTGTGACTAAGAGTGGTGACTCGCAAAGAGATTCAAGACAAAATGTTACTGTAATAACGCATGCCAATTCCAACAACAAGGAAGTCTTCGGGTGTAACGGCAAACCAGCACCGCAAACCAAGCTTCACGCTTTACCAGCTACAACTGAAGTGACAAATTTGCAAGATAGTTTAAACATTTCCAGAGTGGAAGTTGGAAAGCAAAGCGGAGCTGGCGTGCAAAACCACAGCAGTTCAAAACTTGAAATTACTGGATCAGGTCGTAATGGTGACTCGTGTGGTAAAATGACTAAGGTTAAAGAAAGAGGTCTAAGAATTCAAGAAAACGGAGCTAAAGCTAATGAAAATCTCCAAGATGGAGCTAATCTTAAAAGGAAAGCAGCAATAAGCATTGGTAGCTTAATAGGTTCGGCAAATGGTTCTGCTATTGGGCCTGTAAATGTCAGTGCCACAACCAACAGCGTTCCTAAGTGTCTCATAAGTCCAGCCACAAGTTTGTCAAGTCTGAACAAACGAGCAAGAGAATCTTTTGCTGGTGACTTCAAAAGTGAAACACCCAAGTCCATTATGCCTGGGCTTCTTTGGAAAAGAGGTCTTGTTAAGCAGACATTGCGCTACAACCAACACACGCCTTCTGGTACTCTTATTCATCAAACACCGCTCGGAATTGGTCAAGGAGCGAATTCCACAGCTAATCAGCCGTGCAAGGTATCGAATGTTGAGCCTCAAGTTGTGACCACGCCCTTGTTCAGGGTACCGGGTAATCGCACCTCTCTCGCAAATAAGCAACAAGAAAAACAAGGACATGACAAAGATGCTCATCTCACAACATATAATTCAGTATCTGGTAGAGACTTAGAACAAACAACTAGCGAACGTGGGGGAACACCTTCAGTTGTAGCCAGAAACTATCCAGTGCTCTTACCAAAACCTCGTTTAAACTCTAAAGGGAAAATACGCCCTTTCACCCCACCCCTTGGTGTTAAAACGAAGGTAACTCCCAAAGCCACCCCTCCCGTTGCTTGTTTCAATGGAGGCGGTGTTACTCCGCCACTGTGCAACTGCGGTCGCCGCACTCGACGAAGGTCGGTCACCAACCCAGGACCTAACCAGGGAAGAGCTTTTTTCACATGTTCTCTGAATCATGGCAGGTCAAGTCTGCGTTCGAGTGCTGATAAAAGTAAAGCCAAAAGTGGCTGTACGTTTTTCCGTTGGGAGGTTCGTTTGTAGCGCTGTGCAATTGCAGATGTTTGGTGGTCTTTTGTATTGTGATAAGCCTCCAAAGTTCAATGCATTACATTGTATACAGTTTCATGCATTTACTAATTGATCAGATTGGTAAATAAAAGTGGTGAACTCAACAAACCTCTTTCTAGCAATAATTGTGCGGAAATTGTGAGTGAGTTTGACATGCAAGCGAGGCTGTATTTTGGCTTAAGCAAGCTAGACGTGCGTAAGTGCGGCCATGGAACGTCAGGCCCTCAGCGACTTGGAATATGGAGAGTGAGTCTAGAACGAGATTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06839 all species →	zf-GRF	GRF zinc finger	Domain	Interproscan
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051274 all species →	Family	3'-5' Exoribonuclease	Interproscan
IPR010666 all species →	Domain	Zinc finger, GRF-type	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR047201 all species →	Domain	ERI-1-like, DEDDh 3'-5' exonuclease domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23044 all species →	3'-5' EXONUCLEASE ERI1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18417	ERI2; ERI1 exoribonuclease 2	EC:3.1.-.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.