Detailed information of FUN_044310-T1 in Siderastrea siderea

Genomic Location: contig_59:242641...274480
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00520
all species →		Ion_transIon transport proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002153
all species →		FamilyTransient receptor potential channel, canonicalInterproscan
IPR043136
all species →		Homologous_superfamilyB30.2/SPRY domain superfamilyInterproscan
IPR044736
all species →		DomainRan-binding protein Vid30/RanBPM/SPLA, SPRY domainInterproscan
IPR005821
all species →		DomainIon transport domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10117
all species →		TRANSIENT RECEPTOR POTENTIAL CHANNELInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005262
all species →		Molecular Functioncalcium channel activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0015279
all species →		Molecular Functionstore-operated calcium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0034703
all species →		Cellular Componentcation channel complexInterproscan
GO:0051480
all species →		Biological Processregulation of cytosolic calcium ion concentrationInterproscan
GO:0070588
all species →		Biological Processcalcium ion transmembrane transportInterproscan
GO:0070679
all species →		Molecular Functioninositol 1,4,5 trisphosphate bindingInterproscan
GO:0005216
all species →		Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →		Biological Processmonoatomic ion transportInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04950CNGA3; cyclic nucleotide gated channel alpha 3-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044310-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
85TPM > 0
7Conditions
2,666.5Max TPM
818.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 706.14 1,710.53
holobiont · low.pH Control.temp 20 20 1,069.71 2,401.77
holobiont · control.pH_high.temp 20 20 867.86 2,666.50
holobiont · control.pH Control.temp 19 19 866.14 2,250.12
Whole organism 4 4 44.68 52.18
unannotated 1 1 10.21 10.21
live coral tissue/skeleton 1 1 38.75 38.75

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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