Detailed information of FUN_044457-T2 in Siderastrea siderea

Genomic Location: contig_59:1959309...1965049
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00782
all species →		DSPcDual specificity phosphatase, catalytic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000387
all species →		DomainTyrosine-specific protein phosphatases domainInterproscan
IPR000340
all species →		DomainDual specificity phosphatase, catalytic domainInterproscan
IPR029021
all species →		Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR052449
all species →		FamilySerine/Threonine/Tyrosine-Interacting PhosphataseInterproscan
IPR020422
all species →		DomainDual specificity protein phosphatase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46588
all species →		SERINE/THREONINE/TYROSINE-INTERACTING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016311
all species →		Biological ProcessdephosphorylationInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0032091
all species →		Biological Processnegative regulation of protein bindingInterproscan
GO:0062026
all species →		Biological Processnegative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic processInterproscan
GO:0070372
all species →		Biological Processregulation of ERK1 and ERK2 cascadeInterproscan
GO:1990444
all species →		Molecular FunctionF-box domain bindingInterproscan
GO:0006470
all species →		Biological Processprotein dephosphorylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18042STYX; serine/threonine/tyrosine-interacting protein-Protein phosphatases and associated proteinsko01009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044457-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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