Detailed information of FUN_044507-T1 in Siderastrea siderea

Genomic Location: contig_59:2536764...2574378
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_044507-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR051500
all species →		FamilycTAGE and MIA/OTORInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23158
all species →		MELANOMA INHIBITORY ACTIVITY-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0009306
all species →		Biological Processprotein secretionInterproscan
GO:0035459
all species →		Biological Processvesicle cargo loadingInterproscan
GO:0070971
all species →		Cellular Componentendoplasmic reticulum exit siteInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_044507-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044507-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
82TPM > 0
7Conditions
259.5Max TPM
92.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 69.71 166.78
holobiont · low.pH Control.temp 20 20 141.59 259.52
holobiont · control.pH_high.temp 20 19 77.04 191.69
holobiont · control.pH Control.temp 19 19 102.81 248.25
Whole organism 4 4 22.74 25.84
unannotated 1 1 26.34 26.34
live coral tissue/skeleton 1 1 15.56 15.56

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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