Gene detail

Detailed information of FUN_044540-T1 in Acropora pulchra

Genomic Location: ntLink_8:35724976...35730454
NR annotation: XP_029208040.2, uncharacterized protein K02A2.6-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_044540-T1

ATGACGGAAAGTGTGGCAAGTGGTTCGCAGTCCGCTGAAGTCCAAGGAGGAAGTTTTACTTCAAGTAGCGCTCCGATGGTTAGTTATTTCGGTCGAATGGACGCTTTTGACCCGAAAGTAGAAGAGTGGTTGACGTATGTGGAGCGTCTTGAGATGTTTTTCGTGGTAAATAATGTTCCCGACGATAAAAAAGCAGCCAGTTTACTTACCTTGATCGGAGGACGGATGTATGCATTATTGAAGAGTTTAACAACACCGACTAAACCGACGGAGTTGTCGTTTAAAGAGATTGTGGAGATTATGGGGCGACACTTGACACCAAAACCGATTGTCATCACCGAAAGGTACAAGTTCCATAAATACCACCAAGAAGAAGGTCAGTCAATCCGAGAATTTTTAGCTAAGTTGCAAAAGTTGGCCGAAACATGTGAATTCGGTGGATACCGAGACGAAGCTCTCAGAGACAGACTAGTGTGTGGTGTAACTTCCCAAACAATCCGAAGAAAACTGTTAGGTGAAGCAGATCTAACCTTGAAGAAGGCTGTAGATATCGCAGTAAGAATGGAGTTGACTGATAAGGAAATTACTCAGATTTCGGCGATTCAACAAGTGCATAAAGTTCAGCTTCAGGAGTGTTTTAGATGTGGTAAACATAATCATTCCCCAGACAAGTGTTTCCATAAGCTTTCAGAATGCTATATTTGCAAAAGAAAGGGACACATAAGTCCAAAATGCCCTCAGAAAATCTCTAGTAAACCGCCAGCTTCCAGCAAACCTAAACAAGCTGAAGCCAAACAAAACAAGAGTTTTAAGAAAAAGAAGAAAAGTTCAAGAATAAAATTTGTTGACACTCAAGCAAGTAGTTCTGAAAGTGAGGTGCCCGAAGATGAAGATTTTAGCTTAAGGGATGAATTTCCAAGTGAATGGCCTATGTTCGCCATAAGTAGCCCCTCAAGGAGAAAAGCTGACGAAATTCTGGTACCAGTTAAAATCAATGGTATTTCTTTTAAAATGGAACTGGACACAGGAGCATCTGTTACTGTGATCCCGGAAGAAATGTGGGAGAAGGATTTAGGATCAGTGCCCTTAGTGGAGTCTAGTGTGACACTAAAAAGTTATTCTGGTCATGCTATACCTGTAGTTGGTGAAACCACTGTTCATGTCCAGTATCAGACCCAACAAGTGAATTTGCCCATTGTGGTCACTAAAGGGAAAGGTCTTGCTCTTATGGGGAGAGATTGGTTGTCAAAACTTAAGTTGGACTGGCATCAAATTAGTAACATCCAACAAGCCAATCCACCCAAACCTAAATTGGAAGACATTGTTCAACAGTTCCCCAAGCTGTTTGATGGTAAATTAGGCACCATTAAAGGATTTACAGCTGAATTGAAAGTGAAAGAGAATGCACCACCACAGTACTTTAAGCCACGCACCGTACCATTTGCACTGAGAGATAAAGTTGAAGCAGAGATTCAACGTCTGGAGAAGGAAGGAGTGTTAAAGAAAGTGGAAAGTTCTGATTGGGCTACTCCCATTGTACCTGTTCTAAAGCCGGATGGAACAGTTAGAATTTGTGGTGATTTCAAAGTAACTCTAAATCAGTATTTGGATGTACCGGAGTACCCCATGCCTACTTCAGAAGAACTGTTTACAAAGTTAAATGGAGGAGAGTTGTTCACTAAGTTGGACCTCAGTCATGCCTACCAACAGGTGGTTCTGGATGAGAAGTCACAGCCCTATGTCACTATTACAACTCACTTAGGCCTGTATCGATACACCAGACTTCCATTTGGGGTAGCTGCTGCACCTGCAATTTTCCAACAAATCATTGACAAGAAGTTAGATGGCCTGAGTCAAACAGGAGGGATCCTGGATGATTTAATTGTCACTGGTGAAAATGACGAGCAGCATGCACGCAACTTATACAAGACTCTTAAGAAGTTTGAAGACTCTGGAGCAAAGTTCAAGAAGTCCAAATGTGTCATCATGCAGCCCAAGATTGAGTACTTCGCATTTGTGCTGGACCTCCGCGGCATCCATCCATCCCCTGCAAAGGTTCAAGCCATCCTCGAGGTACGTGATCCACAGAACCGAAGTGAACTGCAATCATTTCTTGGTCTAGTTAATTATTACCGCAAGTTTATTCCTAACATGTCAACACTTGTCAGCCCATTGAATCAATTGCTGTCAAAGGACACACCTTGGTGTTGGAGTCCTGAGTGCAAAGGCTCATTTCAAGCACTCAAGGACACCCTTGCTTCGTCAAGCGTGTTAGCTCACTACAGTCCAAAATTGGAAGTTCAGTTGGCAGTAGATGCGTCACCAGTAGGCCAGGGAGCGGTAATTTCACACATCACTGAAGATGGAACCGAACGACCTATTGCTTACGCTTCAAGGTCATTAACGAAAGCTGAAAGAAACTACTCAGTCATTGAGAAAGAAGCTTTGGCCATCATATTTGGCATACGCAAGTTCCAGCAATACTTGTATGGCCGCAAATTTACCTTGTTGACAGACCATCAGCCACTCACGTTGCTATTTGGCCCCAAGAGAGGGATACCACCCATAGCAGCATCGCGCTTACAAAGATGGGCCATACAGCTGTCAGCATACCAGTATGAAATCAGGTACCGCTCATCCAAGCAGAATGCAAATGCAGATGCATTCTCTCGCTTACCCAGTGAGACCAAGAGTGAAAACCAAGATTTTTAA

Transcript

FUN_044540-T1

TGTTATGACGTAATAAGATAGTCATGTGACTTCCATGTGCTCTTGTAAGTTGTTGTTGCCGAACCGCCATTAAAACGTTGTTGTTCGTAAGTTGAACCTATTGAAGTCATTCGAACCTAAACACCACAAAGTTGGCGACGAGGATTTGGATTATTAAAATGACGGAAAGTGTGGCAAGTGGTTCGCAGTCCGCTGAAGTCCAAGGAGGAAGTTTTACTTCAAGTAGCGCTCCGATGGTTAGTTATTTCGGTCGAATGGACGCTTTTGACCCGAAAGTAGAAGAGTGGTTGACGTATGTGGAGCGTCTTGAGATGTTTTTCGTGGTAAATAATGTTCCCGACGATAAAAAAGCAGCCAGTTTACTTACCTTGATCGGAGGACGGATGTATGCATTATTGAAGAGTTTAACAACACCGACTAAACCGACGGAGTTGTCGTTTAAAGAGATTGTGGAGATTATGGGGCGACACTTGACACCAAAACCGATTGTCATCACCGAAAGGTACAAGTTCCATAAATACCACCAAGAAGAAGGTCAGTCAATCCGAGAATTTTTAGCTAAGTTGCAAAAGTTGGCCGAAACATGTGAATTCGGTGGATACCGAGACGAAGCTCTCAGAGACAGACTAGTGTGTGGTGTAACTTCCCAAACAATCCGAAGAAAACTGTTAGGTGAAGCAGATCTAACCTTGAAGAAGGCTGTAGATATCGCAGTAAGAATGGAGTTGACTGATAAGGAAATTACTCAGATTTCGGCGATTCAACAAGTGCATAAAGTTCAGCTTCAGGAGTGTTTTAGATGTGGTAAACATAATCATTCCCCAGACAAGTGTTTCCATAAGCTTTCAGAATGCTATATTTGCAAAAGAAAGGGACACATAAGTCCAAAATGCCCTCAGAAAATCTCTAGTAAACCGCCAGCTTCCAGCAAACCTAAACAAGCTGAAGCCAAACAAAACAAGAGTTTTAAGAAAAAGAAGAAAAGTTCAAGAATAAAATTTGTTGACACTCAAGCAAGTAGTTCTGAAAGTGAGGTGCCCGAAGATGAAGATTTTAGCTTAAGGGATGAATTTCCAAGTGAATGGCCTATGTTCGCCATAAGTAGCCCCTCAAGGAGAAAAGCTGACGAAATTCTGGTACCAGTTAAAATCAATGGTATTTCTTTTAAAATGGAACTGGACACAGGAGCATCTGTTACTGTGATCCCGGAAGAAATGTGGGAGAAGGATTTAGGATCAGTGCCCTTAGTGGAGTCTAGTGTGACACTAAAAAGTTATTCTGGTCATGCTATACCTGTAGTTGGTGAAACCACTGTTCATGTCCAGTATCAGACCCAACAAGTGAATTTGCCCATTGTGGTCACTAAAGGGAAAGGTCTTGCTCTTATGGGGAGAGATTGGTTGTCAAAACTTAAGTTGGACTGGCATCAAATTAGTAACATCCAACAAGCCAATCCACCCAAACCTAAATTGGAAGACATTGTTCAACAGTTCCCCAAGCTGTTTGATGGTAAATTAGGCACCATTAAAGGATTTACAGCTGAATTGAAAGTGAAAGAGAATGCACCACCACAGTACTTTAAGCCACGCACCGTACCATTTGCACTGAGAGATAAAGTTGAAGCAGAGATTCAACGTCTGGAGAAGGAAGGAGTGTTAAAGAAAGTGGAAAGTTCTGATTGGGCTACTCCCATTGTACCTGTTCTAAAGCCGGATGGAACAGTTAGAATTTGTGGTGATTTCAAAGTAACTCTAAATCAGTATTTGGATGTACCGGAGTACCCCATGCCTACTTCAGAAGAACTGTTTACAAAGTTAAATGGAGGAGAGTTGTTCACTAAGTTGGACCTCAGTCATGCCTACCAACAGGTGGTTCTGGATGAGAAGTCACAGCCCTATGTCACTATTACAACTCACTTAGGCCTGTATCGATACACCAGACTTCCATTTGGGGTAGCTGCTGCACCTGCAATTTTCCAACAAATCATTGACAAGAAGTTAGATGGCCTGAGTCAAACAGGAGGGATCCTGGATGATTTAATTGTCACTGGTGAAAATGACGAGCAGCATGCACGCAACTTATACAAGACTCTTAAGAAGTTTGAAGACTCTGGAGCAAAGTTCAAGAAGTCCAAATGTGTCATCATGCAGCCCAAGATTGAGTACTTCGCATTTGTGCTGGACCTCCGCGGCATCCATCCATCCCCTGCAAAGGTTCAAGCCATCCTCGAGGTACGTGATCCACAGAACCGAAGTGAACTGCAATCATTTCTTGGTCTAGTTAATTATTACCGCAAGTTTATTCCTAACATGTCAACACTTGTCAGCCCATTGAATCAATTGCTGTCAAAGGACACACCTTGGTGTTGGAGTCCTGAGTGCAAAGGCTCATTTCAAGCACTCAAGGACACCCTTGCTTCGTCAAGCGTGTTAGCTCACTACAGTCCAAAATTGGAAGTTCAGTTGGCAGTAGATGCGTCACCAGTAGGCCAGGGAGCGGTAATTTCACACATCACTGAAGATGGAACCGAACGACCTATTGCTTACGCTTCAAGGTCATTAACGAAAGCTGAAAGAAACTACTCAGTCATTGAGAAAGAAGCTTTGGCCATCATATTTGGCATACGCAAGTTCCAGCAATACTTGTATGGCCGCAAATTTACCTTGTTGACAGACCATCAGCCACTCACGTTGCTATTTGGCCCCAAGAGAGGGATACCACCCATAGCAGCATCGCGCTTACAAAGATGGGCCATACAGCTGTCAGCATACCAGTATGAAATCAGGTACCGCTCATCCAAGCAGAATGCAAATGCAGATGCATTCTCTCGCTTACCCAGTGAGACCAAGAGTGAAAACCAAGATTTTTAACGGGAAGCCGAGGAACTTAACAAGCTTCAAGTAGCCCGAGTGCCCATTAATGCCAAGCTTCTCCGTGAAGAAACAGCACGGGATGCAGTTCTATCAAGAGTAATGCATTTCACTTTTCATGGGTGGCCTGACCAACAGGAAGTTCCTGATAATTTGAACAGCTTCTACCGCCAGCGCCATGAACTCACAGTAGAAGACGGATGTCTACTAAGAGGAACAAGAGTGGTCATTCCAGTGAAACATCAAGAAGCTGTGTTGGCAGAATTACACCTCAACCACCCTGGAATTGTTCGTATGAAAGCCCTTGCTCGTTTACATGTCTGGTGGCCAACCCTCGACTCTGATATCGAACAGATAGTGAGAAATTGTGAGGTTTGCCAAACTACGCATGGCAAAGCACCGCTTACTTCAGACAACCGCTGGATTTGGCCACACCGAGCCTGGCAGCGAGTACATGTTGATTACTGTGGTCCGTTAGATGGGAAATCTTTCCTTGTCATCGTGGATGCAAAGTCTAAATGGATAGAAGTACTACCCATGTCCAGTACTACCGCTGAGGCAACAGTACAAGCCTTGCGTGTTGTATTTTCTACCCATGGTCTACCAGAGGAAATTGTCTCTGATAATGGCCCTCAATTCATTGCCCAGGAGTTCAGAGATTTTCTCAAGTGCAATCACATCAAGCACTTTTTGAGTGCGCCTTATCACCCTGCATCGAATAGGGAGGCTGAAAGAGCAGTAAGAACATTCAAGCAAGCCATGAAAGCTTCCAAGCTCGATTCTGGTACCTTGGCAAAGAAGATATGCTCATTTCTGTTGAGCTACCGCTCTACTCCGCACACTGCTACTGGATGTACGCCAGCAGAATTACTTATGAATCGCAGAATACGCACCAGATTAGATGTGCTACGCCCAGATCTGAGGAAGAAAGTTACCAAGCCAAACAAGCTGCAACCAACTACACCAAAGAGACAACTGACTGTTGGGGATCCAGTTCTTGTTCAAGATTATAGGAAAAGTAGAGATCCTTGGAGCAAAGGCGTCATCGTCTCTAAGTTAGGCCCGGCGACATACCGTGTGCAAGTAGATAGTTTCTTTTGGAAGAGGCATATCGATCAACTTAAAGATCTGTCTGGAACCAAGTTACCATTTCCAAGACAAGGGGAAAGTGAAGTTGTACTGCCCCAAGCCTTTTCAGCCAGTTCATCTATCACAGAGTCAATTCCCTCATCAGATTACACACCTGTAACTGATAAACCAAATTCGAAGTTAGATACGCCGTTGCCTGAACAAGGAAATTCCTTAACATTTCCCACTGCGGAAGAGTCAGCTATGCAAGAAGAACCAAAGACTCTGACAAGGCGTTTCTCGCGACGAGAAAGAAAGCCCCCTGAACGCTTAATCGAACAAATGTGATAGACTACAGGGAAACAGTTAACTTTTGTTTGAAGACATTTATTTAAGTCTTAAAGAGAAAGTTTTGTGTTGCTGTATCGAACAAACTTTTCCTAAGGAAGGGAGGAGTGTTATGACGTAATAAGATAGTCATGTGACTTCCATGTGCTCTTGTAAGTTGTTGTTGCCGAACCGCCATTAAAACGTTGTTGTTCGTAAGTTGAACCTATTGAAGTCATTCGAACCTAAACACCACAATGGTCATTGGGAAAAATTTTGGGGCTCCTAGCTAGGAGTCAAAGCTATGACCTTCCTGTCGCAATTTTTTTTTTCCTAACATGTTATGATTTTCTTTTTTTTTTTCTTTTGCTTTTAGTTTTTCGGTCTTAGTATGTCGTGTGGTCCTAGTGTTAATGGTCTCGTGTTCATTCAACGTTGTACCGTAGGTTGTAATTAGAGGTGTATTGTAATTTAGTCTGTTATTGAAAGTTTGTAAGTTTATTGTTCCTTTAGTGCTAATTTAATATGGAGAAGCTCAAATGTTGCTTGGTGTATTCTAAGGTACATAGGAACAAAATAGAGACTAGCATAGGCAATGCAGGGAGTCCAACTCCCTTCATATCCTCTGCTAAACTGTCTTCTTTCAAAATAAAGGTAATACATACTGTCTAAAATAAAGCTACTATAATCCAAGCAAGTTTTTAAACATGCCTTTAATATGTTAGCTTTATTTTGGACTAAGAGCTCTGGTTGGTTATAATCTACAGTAAAGGGCCATAGAGGGGGTATTTTTCCCTCAGAAGATACTAATTTAAAAGCCCTTTTCATTTCAATGCCCTTCGAGTGTTGCAAATTAGTGCTGTGTAGCCACCCCGAGAAAAGCGTGCATTGTGATGTACAGCTGCATTAAGGCTACAAATCAGACACTGAGGGAGAAAAACATAGGCCCCCTAGACCACATCCTCCACTAAGATCAATTTTTGTATATATGCGAAACTTTTTCAGTTATTTCTTAAGACATCGTCATATACGCATGTGCTGTTCTAGAACCAGTTATTTCAAAGTTCAGTGCGATTTTCAAGTAATTTTGTCCTTTGTACCTACCTATTGATAAGAGATACAACCACATAAAGCGAGACACTGTCATTAATGCTCAACAGAGATGCATCGCAATTTGGTGTTAGCGCAGTCAACGTGGAAATTTTGCGATTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1
P0CT35	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000022 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01885	EARS, gltX; glutamyl-tRNA synthetase	EC:6.1.1.17	Prokaryotic defense system	ko02048	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.