Detailed information of FUN_044688-T1 in Siderastrea siderea

Genomic Location: contig_59:5156534...5162070
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02953
all species →		zf-Tim10_DDPTim10/DDP family zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050673
all species →		FamilyMitochondrial import inner membrane translocase subunitInterproscan
IPR004217
all species →		DomainTim10-likeInterproscan
IPR035427
all species →		Homologous_superfamilyTim10-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13172
all species →		MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9BInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_044688-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_044688-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044688-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
14TPM > 0
7Conditions
391.4Max TPM
15.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 19.57 391.43
holobiont · low.pH Control.temp 20 2 18.58 194.82
holobiont · control.pH_high.temp 20 2 14.44 273.74
holobiont · control.pH Control.temp 19 3 13.72 125.40
Whole organism 4 4 4.45 4.97
unannotated 1 1 9.71 9.71
live coral tissue/skeleton 1 1 8.59 8.59

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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