Detailed information of FUN_044755-T1 in Siderastrea siderea

Genomic Location: contig_60:922064...941687
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00498
all species →
FHAFHA domainFamilyInterproscan
PF15276
all species →
PP1_bindProtein phosphatase 1 bindingFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000253
all species →
DomainForkhead-associated (FHA) domainInterproscan
IPR008984
all species →
Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR029334
all species →
DomainProtein phosphatase 1 binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21603
all species →
ANTIGEN KI-67-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005694
all species →
Cellular ComponentchromosomeInterproscan
GO:0007088
all species →
Biological Processregulation of mitotic nuclear divisionInterproscan
GO:0051983
all species →
Biological Processregulation of chromosome segregationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17582MKI67; antigen KI-67-Protein phosphatases and associated proteinsko01009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_044755-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
48.2Max TPM
2.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 2 0.09 1.28
holobiont · control.pH Control.temp 19 1 0.12 2.19
Whole organism 4 4 38.53 48.16
unannotated 1 1 21.12 21.12
live coral tissue/skeleton 1 1 18.78 18.78

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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