Gene detail

Detailed information of FUN_045277-T1 in Siderastrea siderea

Genomic Location: contig_61:3473936...3522255
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_045277-T1

ggaagATGGCGGACGAAGACGTTGAAATGGAGAATTTTTCTGAAGAAAGAGCTGAATCGGCGAGCGATTTCACCGCTgaagatgaaaatgaaaagATGGATGGATATGATGCCTTGGAAAGTGAGCCAGAGATGAGAGTTGGCAGAAGTTTGACAGATAATGACTTACTTATTGCGTTAGCTCAGGTCTCTGAGAACAAAGACATGATGCCTGGAAATGGACACAGTAATAAGCATGACCTCAACACAAGTTTGAGCAGTAGCCTTGGTAGCTTGGGTGGCAGTCTGAATAACAGTGGCATGCTGGTTAGTAAAGGAAAGGAAACAACGGGTACGGCACCCCGGAAATCTGCCAGAGGAAAACGGAAGCTGGACAGCAGTCAACAACTGTCATCATCGAAGAAATCAAAGAGTGATCTACCACCTTCGCAGAAACTTCCTCCGCATGGGTATCCTTTAGAACATCCTTTTAACAAGGATGGTTATAGGTACATTTTAGCAGAACAAGACCCAAATGCCCCTTTGGCAAACATGGACATGGAATTTTGGGCTGGAAAACCAATCCCTGGGGACCTCTACAGAATTAAACTCCACAAGGAAGTTCTTCTTTCCATGAATGACAGAGCTCCTCAACTCAAATTGTCTGATGACAGGTTATCAGTTACTGGAGAAAAAGGCTACTGCATGCTGCGAGCAAGTCATGGGGTGACAAAGGGTAAATGGTACTTTGAGGCCACTGTGGACTTACCACCAGAGTCAGCGACCAGAATTGGCTGGTCACAGCTCTATGGTAATCTTCAAGCTCCGTTAGGTTATGATAAGTTTAGCTACTCATGGAGAAGTAAAAAGGGCACAAAATTTCATGAGAGTAGAGGAAAACACTACAGTGACGGGTATACAAGTGGTGATGTAATAGGATTTTTTATTAATCTCCCAGAAATCAATAGGCGTCCAGCGGAATTCCTCCCACCCACCTACAAAGATAAGGCGTTAATAAAGTTCAAAAGTCATCTTTACTTCGAAGAAAAAGATCTCGTGGACAAAGCAGAAAAGAGACTAAGACCTTTACCTGAAAGTCAGataaaattttacaaaaatggGGTTTGTCAGGGTGTTGCATGGCAGGATGTGTACCAGGGAACATATTACCCATCAGTGTCACTTTACAAGAACGCCACGGTCACTGTCAATTTTGGACCCGATTTTCAATTTCCGCCAACAGATGAAGACTTCCAGCCGATGAGCTACAAAGCCGAGGAATTCGCCGTGGAGCAGAGTGTATCTGACCTTCTGTACCTCGTAGATACGCAGGAAAGACCGGTGCCCCTTCCAGAGAAAATACTTGTGCCTCCAAAGAGAAAGTGACATACGCCCGTGTTTAGCTGACGTTGCTGTTATTCGTTCGATCtagaagtgtttttttttttcaaagctttttcGCAAAACAGAACACATGGTAGAACAGTGTTAACGTAGATTTCCAATCTTGTCATTGTATTTGCTTTCTCTTTCTTTAGAACGCCCCTTTACACGAGCGAGTTTTGATGAGAATTTTGTGGTCACTTGAGCGGCGATTTTCATTGCAAATGCAATCAGCCGTGTAAACAGACGACAAATTCAAGGCAATTTTGCGGCCATTCGTCTCAACGAACTTGCTGAGTTTTACTTGCAACAGGTTTGGAGCAGACCAGGTTACGTGATTGCTTGGCCTGTTTGTAGTTAAGCAGAAAAATatgtaaattttaaatttctagCGTCCATtttcttgaaccaatatcaattTAAAGTTCGGTGTCGTTTTGTAAATAGGTGAAAAGATATATCCGGTTCAACTAAGCTATTTGCCTATTAAATTCGCTGAGAGACCGATCTTTCTGGTGGCTGTCGAATAAGGTAGATTGCAGCTTGCACTGACCAATCAGGGCTCGggagttttcttttttagccAATTAATCAGGCTCTAAGCCAGAACGTACGTGCCTTTTCCCGCCACAAGTTTTCGCTGCGGGTTCTGATTGAATTCAATTCACAACGTACTTATTCAGGGTAATATGTTCCGGACTGGAAAGCTACGTTTGCCAGTTGACACATGTACACGGTTTGACCTTCCATTCATACGCAGATGATTGAAAGCGCACAGAAAATGGTAATTTTCAAGGACGCCATCGACAGCGAAACCGGGTGAAAAACGTTTTGAGATCGCGTTTTAAAAATCCCACCTTTCAGATAAAGACGAATGAAAACGTTTACTTCACTGTCCTCtagcttttattttgttacgtcAGTCATTTGAAAAAGTTGCGCCAAAGCTTGAAACGTGAAACGCATATGCTAAATTTgtgctttctttttattgtaaatagaaGACTCTTAAGATTAAGAATCTCCTATGCTCTATGAATTCCCAGCAGCAGAATCTTCACGCTATTTCGCGATATTTTTTCCCGCTACTACTATGACATACTTGAGGAGCGAGTTCATAGATACACTGCTTCGTTGAATGCGGAGTAGATTAACAGACGATCACTTGTAACATAAGTTAGACTTTTTGTAATAAAGTTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037353 all species →	Family	Histone methyltransferase complex subunit ASH2	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10598 all species →	SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan
GO:0051568 all species →	Biological Process	obsolete histone H3-K4 methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14964	ASH2; Set1/Ash2 histone methyltransferase complex subunit ASH2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_045277-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

80TPM > 0

7Conditions

466.2Max TPM

104.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	19	122.54	381.00
holobiont · low.pH Control.temp	20	17	100.36	412.68
holobiont · control.pH_high.temp	20	20	117.45	466.15
holobiont · control.pH Control.temp	19	18	99.47	254.86
Whole organism	4	4	21.57	25.82
unannotated	1	1	24.86	24.86
live coral tissue/skeleton	1	1	28.27	28.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	381.00
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	289.31
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	250.08
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	222.30
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	220.56
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	150.50
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	128.90
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	125.70
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	107.43
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	78.75
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	69.06
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	68.38
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	63.41
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	63.01
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	61.72
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	47.89
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	46.80
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	40.97
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	34.94
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	412.68
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	368.77
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	202.26
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	140.14
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	130.64
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	130.39
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	123.87
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	109.91
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	105.41
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	86.95
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	86.15
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	31.88
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	22.02
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	19.78
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	16.01
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	11.57
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	8.68
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	466.15
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	253.53
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	234.43
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	187.73
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	164.68
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	163.70
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	153.48
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	136.47
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	111.16
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	67.20
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	64.32
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	58.78
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	54.38
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	50.58
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	48.45
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	39.79
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	37.45
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	24.60
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	24.06
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	8.07
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	254.86
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	202.99
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	186.33
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	169.40
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	154.72
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	119.69
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	113.51
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	89.34
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	88.80
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	83.91
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	80.76
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	77.15
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	68.54
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	66.64
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	59.52
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	41.70
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	18.54
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	13.56
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	25.82
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	23.15
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	18.83
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	18.48
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	24.86
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	28.27

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.