Gene detail

Detailed information of FUN_045290-T2 in Siderastrea siderea

Genomic Location: contig_61:3644380...3673846
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_045290-T2

ATGGTTCCAATCCCAGAAATGACTGATGTGATGAAAGTCGTAAAAGAGGTTGTGTCTGTCAAACCTAAGCAATGGGTCAGATTAAAACGTGGAATTTATAAGGATGACCTTGCGCAGGTGGATTATGTAAACACTGCAAGGAATCAGGTAACACTGAAGATGATCCCCAGGATTGACTACAGTAGATCAAGAGGTTTAGCCAAGTCAGCTGAGGATGCTggagagaagagaaaaaagaaaaggaagccaCCTCAAAAGCTGTTTGATGCTGATGCCATCAGGGGCATTGGAGGTGAGATTGGACAGGATGGAGATTTCATGATCTTTGAAGGCAGTCGTTATCGTGGGGGTTTCATGTACAAGACACTGGCGATGTCTGCGATAGTTGTAGAGGGCATCAAACCAACTCTGCTGGAGCTTCAGAAATTTGAGACAGCACCTGAAGATGTTGAACTGGAAGTAccaacaaaaagcttaaaggaGGGAACAGATGAGGAAAGGCACACTTTTGTGACTGGTGATGTAGTTGAAGTTGCTGAGGGGGATCTGGCTAATTTGAAGGGAACAGTGCTTAGCATTGATGGAAATAAAATCACCATAATGCCTAAACATGAGGACTTGAAGGATCCCTTAGAGTTCATGGCACATGAACTTCAAAAGCATTTCAAGATGGGTGATCATGTAAAGGTTATTGGAGGTCGTTACGAGGGAGACACAGGCCTGATTGTTAGAGTTGAAGACAACATGGTGGTCCTGTTTGCAGATTTAACGATGCATGAGCTCAAGGTTTTGCCCAAAGATCTTCAGTTGTGTACAGAACGGAGCAGTGGAGTGGACTCCATGGGCCAGCACCAGTGGGGAGATATGGTGCAGCTGGATCCACAGACTGTAGGAGTCATCATTCGTTTGGACAGGGATATGTTCTCAGTACTGAACCAGCATGGAAAGGTGATTCAAGTCAAACATCAGGCTGTGGGTAGAAGAAGAGAGAACAAAAATGCTGTTGCACTGGATTCAGAACAGAACTCTGTGCAAGTCAGGGACATAGTAAAAGTCATTGAAGGACCTCATGCTGGATTACAGGGAGAGATCAAGCATCTGTATCGCAGTTTTGCATTCTTGTCTTCTAAGATGGTGATAGAGAATGGTGGGATGATCGTGTGCAAGGCGAAACAGCTTGTACTGGCAGGGGGTGGGAAGGCGGTTTCCAATACATTAGGGATCAGTGGGTTTGCTCCTGCATCACCACGAATAACAAGTCCTGCAAGAGAAGGAGctggtggtggtgctggtggccGTGGTGCCCAGAGAGGAGGAATGGgtcgaggacgaggacgaggtcGTGGAGGTCGTGATATGTCTCTTATTTCACAGACGGTCCGCATCTCGCAGGGACCTTACAAAGGATATGTTGGTATAGTTAAAGATGCTACTGACACCACAGCTCGTGTTGAGCTGCACAGCAGCGTCAAGACAATCTCGGTCGATAGAATGAGGCTCACTATTATTGGTGGTCCATCAAGCCGCGGCAGCTCAGTCTATACCAAGACTCCTATGTATGGATCCCAGACCCCCATGTATGGTTCTCAGACCCCCATGCATGGCTCACGGACACCCATGTATGGCTCACAGACTCCGACTCACGGCGATGGAAGCCGCACGCCTCATTATGGCTCAATGACACCATCCCACGATCCTTCACGTACCCCGCTTCACGGTGGAGCCTGGGATCCAACTCAGCCAAATACTCCCGCGCGCAATGAGGATTATGATTACAACTTTGATacatccaccccctcccctgggGTTTACGGGACACCGAACCCAGCCACTCCCGGAGGGTATGGAGGACCGTATACCCCCAATACCCCTGGGGGAGGAATGTACGGCTCGGAGCCTAGCTATTCTCCATACACCCAGTCCCCATCCCCCGCTGGCTATGGTAACCCCATGACACCTGGAAGTATAGCTCCGGTATCCCCCGCATTTAATCCCCTCACCCCTGGGGCAGGCATGGAGGAAACACAGGCCGACTGGGTCACGACTGACATTGAAGTACGAATTAATGAAAATCACGAGGACCCGCAGCTGATGGACAAGAAGGGCGTGGTCCGCACTGTCTCTGGAAACACGTGTACAGTGTATTTGTATGACGAGAAGCGTGACGTCAGTGTCTCTATTAATAACGTCGATCCTGGGGAACCAGTTAAACAGGATAAGGTTAAAGTGATCTTGGGCGATGACCGCGAGCGCATAGGAACTCTTATCAACATTGACGATCCAGATGGGATTATAAAGATGGACCAGACAGATCAACTCAAGATTCTACCGCTCAAGTTCCTTGCCAAGCTTGGCCCGACGAATATTTGA

Transcript

FUN_045290-T2

gatgatgatgatgatgatgatgatcacaATGTCGAGgatggtaataataataataaattatgaAGTTATATTGTGCATTTTCCATAACAGGAATGATCAAATACACATTACAGGATCAGTAAAAAGCTAAAAGTTCATGTGTACACATGTATGCACAAAATCAAGGATAGTGCAAGAGcagtaataattattgtaatagTTTGTTATTATTTGTGAATGGTTTAATGGTTGTGTATGGGAATGAATGATTAAATAGGGGTGAATGTGTTGATGTTGTCAATCATTTCTGCTTAGTTTTTAATCAATTTCTTGTCCATTAATAAATTTTGTGTGTTGTTAGGCCATTGAAGGATTTGGTACCTTGCGACTTGGGAAATGGCAGCAGAACATGGTTCCAATCCCAGAAATGACTGATGTGATGAAAGTCGTAAAAGAGGTTGTGTCTGTCAAACCTAAGCAATGGGTCAGATTAAAACGTGGAATTTATAAGGATGACCTTGCGCAGGTGGATTATGTAAACACTGCAAGGAATCAGGTAACACTGAAGATGATCCCCAGGATTGACTACAGTAGATCAAGAGGTTTAGCCAAGTCAGCTGAGGATGCTggagagaagagaaaaaagaaaaggaagccaCCTCAAAAGCTGTTTGATGCTGATGCCATCAGGGGCATTGGAGGTGAGATTGGACAGGATGGAGATTTCATGATCTTTGAAGGCAGTCGTTATCGTGGGGGTTTCATGTACAAGACACTGGCGATGTCTGCGATAGTTGTAGAGGGCATCAAACCAACTCTGCTGGAGCTTCAGAAATTTGAGACAGCACCTGAAGATGTTGAACTGGAAGTAccaacaaaaagcttaaaggaGGGAACAGATGAGGAAAGGCACACTTTTGTGACTGGTGATGTAGTTGAAGTTGCTGAGGGGGATCTGGCTAATTTGAAGGGAACAGTGCTTAGCATTGATGGAAATAAAATCACCATAATGCCTAAACATGAGGACTTGAAGGATCCCTTAGAGTTCATGGCACATGAACTTCAAAAGCATTTCAAGATGGGTGATCATGTAAAGGTTATTGGAGGTCGTTACGAGGGAGACACAGGCCTGATTGTTAGAGTTGAAGACAACATGGTGGTCCTGTTTGCAGATTTAACGATGCATGAGCTCAAGGTTTTGCCCAAAGATCTTCAGTTGTGTACAGAACGGAGCAGTGGAGTGGACTCCATGGGCCAGCACCAGTGGGGAGATATGGTGCAGCTGGATCCACAGACTGTAGGAGTCATCATTCGTTTGGACAGGGATATGTTCTCAGTACTGAACCAGCATGGAAAGGTGATTCAAGTCAAACATCAGGCTGTGGGTAGAAGAAGAGAGAACAAAAATGCTGTTGCACTGGATTCAGAACAGAACTCTGTGCAAGTCAGGGACATAGTAAAAGTCATTGAAGGACCTCATGCTGGATTACAGGGAGAGATCAAGCATCTGTATCGCAGTTTTGCATTCTTGTCTTCTAAGATGGTGATAGAGAATGGTGGGATGATCGTGTGCAAGGCGAAACAGCTTGTACTGGCAGGGGGTGGGAAGGCGGTTTCCAATACATTAGGGATCAGTGGGTTTGCTCCTGCATCACCACGAATAACAAGTCCTGCAAGAGAAGGAGctggtggtggtgctggtggccGTGGTGCCCAGAGAGGAGGAATGGgtcgaggacgaggacgaggtcGTGGAGGTCGTGATATGTCTCTTATTTCACAGACGGTCCGCATCTCGCAGGGACCTTACAAAGGATATGTTGGTATAGTTAAAGATGCTACTGACACCACAGCTCGTGTTGAGCTGCACAGCAGCGTCAAGACAATCTCGGTCGATAGAATGAGGCTCACTATTATTGGTGGTCCATCAAGCCGCGGCAGCTCAGTCTATACCAAGACTCCTATGTATGGATCCCAGACCCCCATGTATGGTTCTCAGACCCCCATGCATGGCTCACGGACACCCATGTATGGCTCACAGACTCCGACTCACGGCGATGGAAGCCGCACGCCTCATTATGGCTCAATGACACCATCCCACGATCCTTCACGTACCCCGCTTCACGGTGGAGCCTGGGATCCAACTCAGCCAAATACTCCCGCGCGCAATGAGGATTATGATTACAACTTTGATacatccaccccctcccctgggGTTTACGGGACACCGAACCCAGCCACTCCCGGAGGGTATGGAGGACCGTATACCCCCAATACCCCTGGGGGAGGAATGTACGGCTCGGAGCCTAGCTATTCTCCATACACCCAGTCCCCATCCCCCGCTGGCTATGGTAACCCCATGACACCTGGAAGTATAGCTCCGGTATCCCCCGCATTTAATCCCCTCACCCCTGGGGCAGGCATGGAGGAAACACAGGCCGACTGGGTCACGACTGACATTGAAGTACGAATTAATGAAAATCACGAGGACCCGCAGCTGATGGACAAGAAGGGCGTGGTCCGCACTGTCTCTGGAAACACGTGTACAGTGTATTTGTATGACGAGAAGCGTGACGTCAGTGTCTCTATTAATAACGTCGATCCTGGGGAACCAGTTAAACAGGATAAGGTTAAAGTGATCTTGGGCGATGACCGCGAGCGCATAGGAACTCTTATCAACATTGACGATCCAGATGGGATTATAAAGATGGACCAGACAGATCAACTCAAGATTCTACCGCTCAAGTTCCTTGCCAAGCTTGGCCCGACGAATATTTGAGCTCCCTTCGAATGATTGTGTTATTTGTCGAGTACCTTCGTGTATTGTGCATTATTTTGTACACCCTTAGTGAGCCACAGAGGAGGGAGGACATTACATGGCAGGGAATAGACTGGTTTAAGCCATTCTGTCTCACAAGACAGTTGAGCGCACTTTGCGCGCTTATTGCAgttgaattttaaatgaggCCGTAAGGTTCTTCTGAAAGTATTTTTTGTTGACCAATAAACGTAATTCACCTAATGAAGATGAGGTTTTACATTGGACTAGAGGTCAGAGAACGATCAACACTCTCCCACTTCCCTTTTCTTGTGTTTCATCAGACTCCCGGGTGTCACGCTAGTTTGTACTTCCCGCACTtcatgaaagaaaaaggaatgcATGCATTGTCTTAGGGACTTATCCAACAGAACCAAAAACTGAGCAGCTGCATGTGGTCTATGTTGGCTAATCGCGAAAATTGTTAGAAATCCCACCCTTCTCGCTCCTGTAGCTTTCTCCTACCCGTTGTGAGGTTTGCCTGCTTTCCTGTTTCCGATGGCGTCTATTGCAATTAATGCCATTGCATCACacttatttttcattttcgtgCGCAGGGTCGAGGTGTGAGGATTAATTCGCTATAAATTTTGTTCACGCTTAACACCCCGATCCACATGGGAGATTACTAATTCCACTCGTAGAATGCGCCGCCATATTCTATTGTCCATACCGACGATACCGACTTGGTGTCTGaaataaacataggcacgcagtgcgtgcagaaccgatgacgttttttttattttggcttgCGCAAAGAATGAATTATTTATATCTTGTTTTCGAGCTAGCTGCACGGCCATAACCAGCCGTGCTCCACGCATGTTCCGCGTGGAGGACACTTTATCTCCTAGCTCCCCTACTACGTATTTTTCTGCCCTCTAGTGCTGTCAGTTGTTTAGGAGAcatataaaccaatcagaaactctcTTTTGGACATATATTTGTGAGTTTTAAGGAGTAGGGAAAACGCCAAACCTCGACACCAGACTCTTTCAAaaccgagaagaccctggggacgaggttggggaaAGGCCGAGTTTTGGCCTACCGCTTGGGATCTGTCCTAGATTTTCAAATtgtatttttcttctctttaaGTTAAGATACTTCTATTTAGGAGCTCAAAATGGGAAGAAATCAAGCCAAGGAATAATCAACACCTCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467 all species →	KOW	KOW motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR041975 all species →	Domain	Spt5, KOW domain repeat 2	Interproscan
IPR039659 all species →	Family	Transcription elongation factor SPT5	Interproscan
IPR041976 all species →	Domain	Spt5, KOW domain repeat 3	Interproscan
IPR041973 all species →	Domain	Spt5, KOW domain repeat 1	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR041977 all species →	Domain	Spt5, KOW domain repeat 4	Interproscan
IPR041980 all species →	Domain	Spt5, KOW domain repeat 6	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR024945 all species →	Domain	Spt5 C-terminal domain	Interproscan
IPR041978 all species →	Domain	Spt5, KOW domain repeat 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11125 all species →	SUPPRESSOR OF TY 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0032044 all species →	Cellular Component	DSIF complex	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15172	SUPT5H, SPT5; transcription elongation factor SPT5	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.