Detailed information of FUN_045329-T1 in Acropora pulchra

Genomic Location: ptg000022l:9648441...9651413
NR annotation: XP_015761819.1, PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5A-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UXZ9Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2
P29375Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3
A1YVX4Lysine-specific demethylase 5C OS=Sus scrofa OX=9823 GN=KDM5C PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004118 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628
all species →		PHDPHD-fingerDomainInterproscan
PF08429
all species →		PLU-1PLU-1-like proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR037869
all species →		FamilySpp1/CFP1Interproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR047970
all species →		DomainLysine-specific demethylase 5A, second PHD fingerInterproscan
IPR013637
all species →		DomainLysine-specific demethylase-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46174
all species →		CXXC-TYPE ZINC FINGER PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0048188
all species →		Cellular ComponentSet1C/COMPASS complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_045329-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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