Gene detail

Detailed information of FUN_045360-T1 in Siderastrea siderea

Genomic Location: contig_61:4450047...4466892
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_045360-T1

acaaaatggcggaagcTAGCGATGTTTCGGTTTCAGAAAATGAGATTTTAGCTCATTTTCAGGATATAACTGGTTATACTGATGTTGAAAAGTGTAGAAGCGTTCTTGAACGGCACAACTGGGACATTGAGACGGCAGTTCAAGACACCCTGAATGAAGAAGAAGGTTCTCAACCAGTTTTCCATCCTCGTCAAAACTCATTTGAAGCTAGTGACGAAGAGGACAGTGGCCTGAGTCGCAATGCCGTCAACCAGAATCAGGAATCAATAAACGGAGACATCACAGGCACACCAACTACAACCACAGTGGCTCAAAGGCCCAACCAGGGCTGGCTGTTGTGGGCTTTGTCGATCCCACTGCTTCCTTTCCGATTTGCTTCCAGTGTCATAACAGATATCGTAGGATGGAttgGGAGACTCCTTTGGCCAACGGCATTTCAAGCTCGTACCACACCACTAGACGATGTGTTGCAGTTTAAGGCAGAATTTGAAAAAGAATATGGCACTGTTCACCCTACATTCTACCAAGGAAGCTACAGTCAAGCTTTGAATGATGCCAAGAAAGAGTTGCGCTTTCTTCTAGTCTATCTTCATAGTTCTGAGCATCAGGATACAGATGAATTTTGTAGgTCAACAATGACAAATGAAGGATTTAAGGAATATGTGAATGGAAACATGTTATTTTGGGCAGCAAATGTGAAAACTACAGAAGGATATAGagTTTCTCGTGCTCTACGTGAAGCCACATATCCTTTTCTGGCTGTTATATGTCTTAGAGATAACCGAATGACTGTTGTAGGACGTATGGAAGGCTTAATGAATGTTGATCGTTATATCGCACTGTTAGCACGGTTAATCGAGGATAACGAACCAGCTTTGGTTGCGGCGAGAGCTGAAAGgCAGGAACGCACCCATGCTCAACAGTTGCGCGATGAACAAGACGAAGCATATTACGAGTCTGTTCGAGCTGATCAAGAAAAAgaaagaaagaaacgagAAGAAGAGGACAGAAAGCGAAGGGAAGAAGAAACGaaaagacaaaaagaagaagCGAAAAGGAACAGGGCAGAGTCCATAGCTCAGGACCGCAGAAGTAAAAAATGTACAATTCCTGAGGAACCTGATATTTCAAATGCTGATGCCATCCGTGTGCTGATTAAACTGCCAAACGGCAAGCGACTGGAGAGGAGATTCCTCAAGTCAGATTCCCTGCAAGCTTTGTACGACTTTGTGTTTTGTGACGAAGAGTCACCTGCAGAATTTGTCCTGGTTTCAAATTTTCCACGTAAAGTCTATGCACTGGACTCCGCAAGCGAGGATCAAACGCTAGAGGACGCTGGTATCGAGGCTAATGCGCTGCTATTTGTACAAAACATAGAAGACGAGAGCGACAGCGATTAACGATACCCAGCGGTTGTTCATGAAGTAACAGATACATCGCAGCCCTGCCGCGCCTTCCGAGTCTTCAGGCTCCTCGATCAGCGGTTTGTTGTCCCGGAAAGCGGTAGGTTCCTCATATATGAGGACATATATTAGACTGGAAATACATACATGAAGTACCTACCGGGGAAGACCATCCGCTGGCCTTGGAGCTCGGAGACTCTAAAGGTTATAGCACAGCTTCGAAGATGGGTTttaaaatgatgacatcagttTACACGACAACTAGAGTTTATTTCATATTCCCATTGTTATATAAGCTTTGTAATTGAGGTTCAAAATATTAGTTACCCAATTGGCGTGACAAATCCTTGGTTAAATTACGCCATCGTAAAAATGGCCTATTTTATTGTGAATCGTCACCTGGAGTTATTTGCTTGAGATAACTCGCGTTTCATGAACAATGGCATTCACATTTTGGATCATAGAGAAATGTGTCGAAGTAGTTAGAGAAGGTTtaaaaaaactaaagaaagCAGACTATAAAAATTCGTAACACTCGCGGTATACTGTTCTGTTCAAACACATTCATACCATTGCAGAAGAAAAAATCAAGGGTACAATTCCGTttagcctc

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21021 all species →	FAF1	Fas-associated factor 1	Domain	Interproscan
PF00789 all species →	UBX	UBX domain	Domain	Interproscan
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR049483 all species →	Domain	Fas-associated factor 1/2-like, UAS domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR006577 all species →	Domain	UAS	Interproscan
IPR050730 all species →	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322 all species →	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18726	FAF2, UBXD8; FAS-associated factor 2	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.