Detailed information of FUN_045842-T1 in Siderastrea siderea

Genomic Location: contig_63:448065...490251
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06333
all species →
Med13_CMediator complex subunit 13 C-terminal domainDomainInterproscan
PF18296
all species →
MID_MedPIWIMID domain of medPIWIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009401
all species →
DomainMediator complex subunit Med13, C-terminalInterproscan
IPR041285
all species →
DomainMID domain of medPIWIInterproscan
IPR051139
all species →
FamilyMediator complex subunit 13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48249
all species →
MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003712
all species →
Molecular Functiontranscription coregulator activityInterproscan
GO:0006357
all species →
Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592
all species →
Cellular Componentmediator complexInterproscan
GO:0003713
all species →
Molecular Functiontranscription coactivator activityInterproscan
GO:0045944
all species →
Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15164MED13; mediator of RNA polymerase II transcription subunit 13-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_045842-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
74TPM > 0
7Conditions
149.3Max TPM
54.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 17 59.02 136.73
holobiont · low.pH Control.temp 20 15 55.77 125.38
holobiont · control.pH_high.temp 20 18 59.23 149.28
holobiont · control.pH Control.temp 19 18 53.29 101.36
Whole organism 4 4 20.73 21.94
unannotated 1 1 10.16 10.16
live coral tissue/skeleton 1 1 21.71 21.71

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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