Detailed information of FUN_045900-T1 in Siderastrea siderea

Genomic Location: contig_63:1233867...1239698
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03632
all species →
Glyco_hydro_65mGlycosyl hydrolase family 65 central catalytic domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012341
all species →
Homologous_superfamilySix-hairpin glycosidase-like superfamilyInterproscan
IPR008928
all species →
Homologous_superfamilySix-hairpin glycosidase superfamilyInterproscan
IPR005195
all species →
DomainGlycoside hydrolase, family 65, central catalyticInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11051
all species →
GLYCOSYL HYDROLASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005975
all species →
Biological Processcarbohydrate metabolic processInterproscan
GO:0004553
all species →
Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0003824
all species →
Molecular Functioncatalytic activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22078PGGHG, ATHL1; protein-glucosylgalactosylhydroxylysine glucosidaseEC:3.2.1.107
Enzymes with EC numbers-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_045900-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
16.8Max TPM
0.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 1 0.89 16.83
Whole organism 4 4 2.70 5.55
unannotated 1 1 1.79 1.79
live coral tissue/skeleton 1 1 3.37 3.37

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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