Detailed information of FUN_045914-T1 in Siderastrea siderea

Genomic Location: contig_63:1449591...1450759
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09799
all species →		Transmemb_17Predicted membrane proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019184
all species →		FamilyUncharacterised protein family, transmembrane-17Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13531
all species →		GEO07735P1-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0035869
all species →		Cellular Componentciliary transition zoneInterproscan
GO:1905515
all species →		Biological Processnon-motile cilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_045914-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_045914-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
43TPM > 0
7Conditions
8,351.0Max TPM
745.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 1,021.87 3,919.00
holobiont · low.pH Control.temp 20 10 786.71 4,483.20
holobiont · control.pH_high.temp 20 8 909.68 8,351.00
holobiont · control.pH Control.temp 19 10 467.94 3,089.27
Whole organism 4 4 16.68 20.51
unannotated 1 1 21.37 21.37
live coral tissue/skeleton 1 1 26.30 26.30

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP