Detailed information of FUN_045941-T1 in Siderastrea siderea

Genomic Location: contig_63:1719308...1722733
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02466
all species →		Tim17Tim17/Tim22/Tim23/Pmp24 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039175
all species →		FamilyMitochondrial import inner membrane translocase subunit TIM22Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14110
all species →		MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008320
all species →		Molecular Functionprotein transmembrane transporter activityInterproscan
GO:0030943
all species →		Molecular Functionmitochondrion targeting sequence bindingInterproscan
GO:0042721
all species →		Cellular ComponentTIM22 mitochondrial import inner membrane insertion complexInterproscan
GO:0045039
all species →		Biological Processprotein insertion into mitochondrial inner membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17790TIM22; mitochondrial import inner membrane translocase subunit TIM22-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_045941-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
112.1Max TPM
2.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 2 7.93 112.06
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 11.58 16.71
unannotated 1 1 18.72 18.72
live coral tissue/skeleton 1 1 16.95 16.95

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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