Detailed information of FUN_046063-T1 in Siderastrea siderea

Genomic Location: contig_63:3657249...3667940
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10484
all species →		MRP-S23Mitochondrial ribosomal protein S23FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019520
all species →		FamilySmall ribosomal subunit protein mS23, metazoaInterproscan
IPR023611
all species →		DomainSmall ribosomal subunit protein mS23, conserved domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15925
all species →		MITOCHONDRIAL RIBOSOMAL PROTEIN S23Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_046063-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_046063-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
79TPM > 0
7Conditions
2,528.2Max TPM
529.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 470.60 1,695.42
holobiont · low.pH Control.temp 20 19 867.30 2,181.05
holobiont · control.pH_high.temp 20 19 579.01 2,528.16
holobiont · control.pH Control.temp 19 17 340.10 1,090.86
Whole organism 4 4 37.10 48.63
unannotated 1 1 26.56 26.56
live coral tissue/skeleton 1 1 39.60 39.60

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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