Detailed information of FUN_046192-T1 in Siderastrea siderea

Genomic Location: contig_63:4522391...4577327
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13181
all species →		TPR_8Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR033053
all species →		FamilyHistone transcription regulator 3/CABIN1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15502
all species →		CALCINEURIN-BINDING PROTEIN CABIN 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006325
all species →		Biological Processchromatin organizationInterproscan
GO:0031491
all species →		Molecular Functionnucleosome bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17613CABIN1; calcineurin-binding protein cabin-1-Protein phosphatases and associated proteinsko01009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_046192-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
84TPM > 0
7Conditions
979.7Max TPM
220.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 19 169.75 642.13
holobiont · low.pH Control.temp 20 20 337.42 979.65
holobiont · control.pH_high.temp 20 20 209.48 670.51
holobiont · control.pH Control.temp 19 19 226.06 572.63
Whole organism 4 4 15.53 20.46
unannotated 1 1 6.86 6.86
live coral tissue/skeleton 1 1 14.33 14.33

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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